PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30018.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 383aa    MW: 44722.2 Da    PI: 4.5661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30018.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM484.2e-15171556128
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpk...kvka.eekewyfFskrdkkyatgkrknr.atksgy. 82 
                               F+Pt+e+l+++yL +kv +++++  ++++e+ iy      P+++ +   ++k  +++ +yfFs+++k +++++r++r + ++gy 
  mrna30018.1-v1.0-hybrid  17 TFQPTEEDLLCYYLYNKVFETPFSNYKTFPEICIYGKdglPPRQIWRlyqQCKFpHQDFIYFFSRAEKLNPNKSRNSRkVGTDGYk 102
                              6*********************99999999999997622258777532224444344466******************55568888 PP

                      NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkge......ktdWvmheyrl 128
                              W++t + k+++++ ++e+ g  + + + k+ ++k +      +  W+m+e+++
  mrna30018.1-v1.0-hybrid 103 WSETETFKSIYVAtNKEAFGSLRKFRYEKNLNKKERdicdehHGAWLMDEFTI 155
                              **********99867778899999999854222222223333889*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.09512171IPR003441NAC domain
SuperFamilySSF1019415.36E-1513165IPR003441NAC domain
PfamPF023656.1E-1017154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDQFATLDEL DVGVVTTFQP TEEDLLCYYL YNKVFETPFS NYKTFPEICI YGKDGLPPRQ  60
IWRLYQQCKF PHQDFIYFFS RAEKLNPNKS RNSRKVGTDG YKWSETETFK SIYVATNKEA  120
FGSLRKFRYE KNLNKKERDI CDEHHGAWLM DEFTINHAPN LALYRLKVNA KGGDRKRKSS  180
AAEKNVEDEN LTRRQSLKKR KREPRRSSDQ NSCMSEQQEG TTSQQMPFSY LNEDDQVAQV  240
VPENSNNNFH VELEQILMSD DDCVDDENPI FSPAKLSNYD AQFRASVAQS IAIEQQTHQE  300
QYSDYSVAPQ QQLEPENRCQ EEYEVQLPQQ DQASSSHSNE QQLLANNDFD ISLDDPYFQS  360
DEFINLLRTT ENQLPWWNPD GD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30018.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464579.11e-159PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464580.11e-159PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464581.11e-159PREDICTED: NAC domain-containing protein 102-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-08NAC domain containing protein 38