PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29973.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 877aa    MW: 95256.5 Da    PI: 5.3976
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29973.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.62.4e-085946181640
                      TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                               YCeCfaag++C e C+C+dC+Nk 
  mrna29973.1-v1.0-hybrid 594 SYCECFAAGVYCIEPCSCQDCFNKP 618
                              6**********************96 PP
2TCR50.44.4e-16666704139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              ++k+gCnCkks+ClkkYCeC++ g+ Cs  C+Ce+CkN 
  mrna29973.1-v1.0-hybrid 666 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 704
                              589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.149585706IPR005172CRC domain
SMARTSM011143.8E-4588620IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-5594617IPR005172CRC domain
SMARTSM011142.8E-16666707IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-11668704IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MSDDPRKNLN IEDEELLHGI LHVVVATHAS IARCGLLIYD RSPSVPRKKT PPPPLHNYLH  60
FGEEENTVKL RVAVGGDGVV VVTSEVDECG GAASLEMDTP ERNQIGGTPK AKFEDSPVFN  120
YLNSLSPIKP VKSVHFTQTF SSLSFASLPS VFTSPHVSSH KESRFLKRHN ASDDLSKPEF  180
SPESGNKVCA SEDAAELYNN SSKIQEDCVQ VVSIGEASVE PSSEQSKFVI ELPRNLNYDC  240
GSPDCNTSRC GINKEDFDPE LAEFSASVAQ YVQETSDKGS SDDEAQQQVT CQSEQTKEGT  300
GCDWESLISN AADILIFDSP SSTEAFKELM NHSLGPMTRF STSIMPHLPQ HNISDEQLVQ  360
VNDTIGSGQQ LQIDDHSSQS GEASELKETE HMPNHLNEYM VNNPIVKADN KAETSKPVIN  420
LHRGLRRRCL DFETTGARRK SYNDVSDYSS SLLSQSNENV TTTDKRLIST KPGGESSRCI  480
LPGIGLHLNA LATTSKDYKI IKNENSASGR ELSLPNSNAS IHSPTAGQGS VYESFPSASS  540
ERDMDGTENG VQLSQDASQA STLLANEDFN QNAGQNTLGK LRLANVATLQ FSCSYCECFA  600
AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRNSDSA APEYGDESSK  660
TPASARHKRG CNCKKSNCLK KYCECYQGGV GCSIGCRCEG CKNAFGTKEG SIIGTEAEQD  720
EEETEAAVKS VADRDQQKND IQKHEEQTSA LPTTPLRLSR QLVPVSFSSK SKPPRSSVFS  780
IGGSSSGLYA SQKLGKSNIL RPESKFDQRH SQTVQEDEMP DILQGDCSPT TGVKTASPNS  840
KRVSPPCTFG SSPGRRSGRK LILQSIPSFP SLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1162070349120Protein lin-54 homolog
5fd3_B3e-1162070349120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29973.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296665.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2P6QPF20.0A0A2P6QPF2_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004296665.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-144TESMIN/TSO1-like CXC 2