PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29961.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 42127.8 Da PI: 4.8445 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl mrna29961.1-v1.0-hybrid 17 RGPWSPSEDLRLISFIQKHGHDNWRALPKQAGLLRCGKSCRLRWINYL 64 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.9e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++ +++ +G++ W++Ia++++ gRt++++k+ w+++l mrna29961.1-v1.0-hybrid 70 RGNFTKEEEESIIMLHEAWGNK-WSKIASHFP-GRTDNEIKNVWNTHL 115 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.331 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.727 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.96E-10 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MVGRGRTPCC DKSQVKRGPW SPSEDLRLIS FIQKHGHDNW RALPKQAGLL RCGKSCRLRW 60 INYLRPDLKR GNFTKEEEES IIMLHEAWGN KWSKIASHFP GRTDNEIKNV WNTHLRKKLA 120 LKYSCGDDQS KELSSITSSS SSSSSSSASF QLSSGEPSAG VTAELQNQPN QESNTSKTRN 180 DCELPDSLTI QEKLEKKLPM EVTDQVRVDD AVGMKMLTTS SSFSSYASSN GSSSSQGGGV 240 SRPDDLVFDL KGAYEPQIAD KAVFEIPFES DYGFWNMLDG TLSFEGNPEP LLPQADQTYQ 300 SSNLELVESG NWLSYLEKEL GLEDSTKTNN QDFVMKDATE QLASEKYCDK LPKPTEMDHG 360 MDDYFGMWPP LPENSAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-25 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29961.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294062.1 | 0.0 | PREDICTED: myb-related protein 330 | ||||
Refseq | XP_011460714.1 | 0.0 | PREDICTED: myb-related protein 330 | ||||
TrEMBL | A0A2P6Q8P0 | 0.0 | A0A2P6Q8P0_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004294062.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10029 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-71 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | mrna29961.1-v1.0-hybrid |