PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29863.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 29028.6 Da PI: 7.789 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.3 | 1e-12 | 119 | 220 | 1 | 82 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklk 67 kfYn YA+ GF++rksk+++ ++++ +++r++ Csk g + +++++ ++ r+ +tr+ C+ak++ mrna29863.1-v1.0-hybrid 119 KFYNYYAHVRGFNTRKSKMYRYRTSDFVYRREWECSKTGVNPKKRRNpvevaekkrlvdiketkrrNHMLRKGYRQTRCRCTAKFV 204 6*******************************************999*************7655544444557789********** PP FAR1 68 vkkek.dgkwevtkle 82 vk ++k+ v++ e mrna29863.1-v1.0-hybrid 205 VKWCLrRKKYFVAQTE 220 **98879999998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-10 | 119 | 220 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVDTDDDLDE SWLCSTDHLY ITDESLHDDS EYEASVCGLE QSPSGSTRVP KYEFVGPVNS 60 TGVASSATEI DLSNDLIDDI VLNMKEPSTG DKFNRLNIRD ITYDDVSDLL FEDYEAAGKF 120 YNYYAHVRGF NTRKSKMYRY RTSDFVYRRE WECSKTGVNP KKRRNPVEVA EKKRLVDIKE 180 TKRRNHMLRK GYRQTRCRCT AKFVVKWCLR RKKYFVAQTE RRFADPNFYL AYEVLLPGFS 240 RLTPDSIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29863.1-v1.0-hybrid |
Link Out ? help Back to Top | |
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Phytozome | mrna29863.1-v1.0-hybrid |