PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29828.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 263aa    MW: 28591.3 Da    PI: 8.0307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29828.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-1175121354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L ++++ +k+L
  mrna29828.1-v1.0-hybrid  75 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAEVIRQVKEL 121
                              58*************************8.....7***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.47872121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-975121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-5160215No hitNo description
CDDcd048735.16E-8160226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAFYSFNSNP SIGSDYSTLF NPFAHHGSGD GLRNGSVQAL PHSLVLDSEK GELVKAPARV  60
GKKGVSEAKA LAALKNHSEA ERRRRERINA HLSTLRGLVP CTEKMDKAAL LAEVIRQVKE  120
LKKDSLESSK GFLIPIDADE VKVEHYDSGV GDGTISLRAS ICCDYRPELL SDLKEALDSL  180
HLKMVKAEMA TLGNRVHNVF VLTGCKEGNN DAEAYQHLAN SIHHALSSVL DKASVSPEYS  240
PRTTLPSKRQ RISYFDTSSS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29828.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460603.10.0PREDICTED: transcription factor bHLH106-like
TrEMBLA0A2P6Q4P41e-163A0A2P6Q4P4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004295576.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-33bHLH family protein