PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29800.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 232aa MW: 25832.5 Da PI: 5.1431 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.5 | 1.8e-28 | 71 | 168 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +kkdrh k+ T +g+RdRR Rl a++a++f+d+qd+LG+ ++s +i+WL+q+ak++i +l ++s+ ++ ++++ mrna29800.1-v1.0-hybrid 71 STKKDRHTKVLTTKGPRDRRFRLAAQTAIEFYDVQDRLGYARPSMAIDWLIQKAKASIEALGNSSTVQQ-----------PQQHQG 145 579**********************************************************99944333...........111112 PP TCP 88 gkaaksaakskksqksaasalnla 111 g a +++ + ++ +++a ++n++ mrna29800.1-v1.0-hybrid 146 GPAVPETVEIHQHFNESA-MNNVS 168 222222222222222222.34444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.0E-28 | 72 | 143 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.639 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTSHSQGLYL QLSQLRDSKK QEEEENEVPN QAGDAQEQQD YEARVEAKQP NMNDGRYGKI 60 VKVQGGHIVR STKKDRHTKV LTTKGPRDRR FRLAAQTAIE FYDVQDRLGY ARPSMAIDWL 120 IQKAKASIEA LGNSSTVQQP QQHQGGPAVP ETVEIHQHFN ESAMNNVSKE PVLGFAEEVL 180 NYATNLSEAD FMEMAISQSL MAYNYYTGAG GYNAGDDGEC SSFNSSYVSW N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-15 | 78 | 131 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-15 | 78 | 131 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29800.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462025.1 | 1e-175 | PREDICTED: transcription factor PCF5-like | ||||
TrEMBL | A0A2P6Q4L3 | 2e-94 | A0A2P6Q4L3_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_008225215.1 | 2e-52 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14863 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29800.1-v1.0-hybrid |