PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29800.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 232aa    MW: 25832.5 Da    PI: 5.1431
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29800.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.51.8e-28711682111
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                               +kkdrh k+ T +g+RdRR Rl a++a++f+d+qd+LG+ ++s +i+WL+q+ak++i +l ++s+ ++            ++++ 
  mrna29800.1-v1.0-hybrid  71 STKKDRHTKVLTTKGPRDRRFRLAAQTAIEFYDVQDRLGYARPSMAIDWLIQKAKASIEALGNSSTVQQ-----------PQQHQG 145
                              579**********************************************************99944333...........111112 PP

                      TCP  88 gkaaksaakskksqksaasalnla 111
                              g a +++ + ++  +++a ++n++
  mrna29800.1-v1.0-hybrid 146 GPAVPETVEIHQHFNESA-MNNVS 168
                              222222222222222222.34444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-2872143IPR005333Transcription factor, TCP
PROSITE profilePS5136925.63973131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTSHSQGLYL QLSQLRDSKK QEEEENEVPN QAGDAQEQQD YEARVEAKQP NMNDGRYGKI  60
VKVQGGHIVR STKKDRHTKV LTTKGPRDRR FRLAAQTAIE FYDVQDRLGY ARPSMAIDWL  120
IQKAKASIEA LGNSSTVQQP QQHQGGPAVP ETVEIHQHFN ESAMNNVSKE PVLGFAEEVL  180
NYATNLSEAD FMEMAISQSL MAYNYYTGAG GYNAGDDGEC SSFNSSYVSW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1578131154Putative transcription factor PCF6
5zkt_B2e-1578131154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29800.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462025.11e-175PREDICTED: transcription factor PCF5-like
TrEMBLA0A2P6Q4L32e-94A0A2P6Q4L3_ROSCH; Putative transcription factor TCP family
STRINGXP_008225215.12e-52(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-35TCP family protein