PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29787.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 525aa    MW: 58545.4 Da    PI: 8.248
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29787.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.34.3e-3217114197
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 
                              aCaaC+++r++C++dCv+apyf a+++++f++vhklFG+sn++kllk+l++++ r++a++s v+eA ++ +dP+ G  g +++l++
  mrna29787.1-v1.0-hybrid  17 ACAACRHQRKRCEEDCVMAPYFTADKEEEFKAVHKLFGVSNMSKLLKQLEDQNhRTQAVASFVWEAYMWKQDPIAGPRGRYKALEE 102
                              7************************************************87776******************************** PP

                   DUF260  86 qleqlkaelall 97 
                              +   lk+ l++ 
  mrna29787.1-v1.0-hybrid 103 ECVYLKSLLKSN 114
                              999888776655 PP
2AP2605.6e-19415465255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g
  mrna29787.1-v1.0-hybrid 415 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEEAALAYDQAAFRMRG 465
                              8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.2716118IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3017111IPR004883Lateral organ boundaries, LOB
CDDcd000181.27E-29414474No hitNo description
Gene3DG3DSA:3.30.730.101.8E-30414474IPR001471AP2/ERF domain
SMARTSM003802.7E-37415479IPR001471AP2/ERF domain
PfamPF008472.4E-14415465IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22415475IPR016177DNA-binding domain
PROSITE profilePS5103223.657415473IPR001471AP2/ERF domain
PRINTSPR003671.6E-10416427IPR001471AP2/ERF domain
PRINTSPR003671.6E-10439455IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSIGSNNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK  60
LLKQLEDQNH RTQAVASFVW EAYMWKQDPI AGPRGRYKAL EEECVYLKSL LKSNRPQQEP  120
VGVVDQGSTK GEVEFEGGGV PIYGRGLNYG YPDQTLGLHH GCTSSFTSLL QGQDTESRKA  180
LADCVSVAST TYPTPLSQVR GFQDQRRSGM ESFNFFHQYP TFQGSNVNHN YRPIQAQGRG  240
RGTGAGGIMT DCARTCNGLV VYDPHTGQVQ KREIGAMVPQ VGPILSGHRR STNQRFSPYD  300
QHNPIQVPRQ AMRQQDQNQQ NFPAQHQWNT NCQNCDNFQA AMFILLVAYE DVRWYSIDKN  360
ELPLNENDSQ DMVICQALNE AMALSRSSLP ETHQIPNHQS TSNGLKPVKN VGKKHYRGVR  420
RRPWGKYAAE IRDSARHGAR VWLGTFNTAE EAALAYDQAA FRMRGTKAIL NFPAEFVASL  480
SIQRVAPSFN VPSCLNNSTG TTMEAPETSE SERKTSTTVE APYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29414473160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29787.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460591.10.0PREDICTED: uncharacterized protein LOC101305925
TrEMBLA0A2P6Q4F70.0A0A2P6Q4F7_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004295564.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-28ethylene responsive element binding factor 2