PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29766.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 484aa    MW: 54219 Da    PI: 7.7403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29766.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.3e-342133531128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                              lp+G++F+Ptd+e++ ++L++kv +++      +  +e+i+++d    i++++P++Lp  v++e +  +fF++ +k+y+tg+rk+r
  mrna29766.1-v1.0-hybrid 213 LPAGVKFDPTDQEIL-QHLEAKVLTDTrklhplI--DEFIPTLDgengICSTHPEKLP-GVNKEGQIRHFFHRPSKAYTTGTRKRR 294
                              799***********9.99****999995664322..234665555556**********.666677788****************** PP

                      NAM  77 atk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +++      + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  mrna29766.1-v1.0-hybrid 295 KVHteedgsETRWHKTGKTRPVLA-NGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 353
                              744446555778************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-38208372IPR003441NAC domain
PROSITE profilePS5100534.252213372IPR003441NAC domain
PfamPF023653.4E-15214353IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGLVSAIGWF DRSMDGDPWT SPSRMRGGVE EGERHWVGKM VSPSLEEKRR WPRCCLTVVP  60
RKRWLPGGDY RGVSMMVELT SVVALALMPV VEQYEGRKGD GGGADPSIHD LGLGWLLGKE  120
KVEEIARNQF GVWYERPQKK SSSAEKDQIS SMTWHSDEEE EEERAAVQSI TPSSATYPQQ  180
SKNNKNNEIS SCPSCGHPID FQDQAGIHDL PGLPAGVKFD PTDQEILQHL EAKVLTDTRK  240
LHPLIDEFIP TLDGENGICS THPEKLPGVN KEGQIRHFFH RPSKAYTTGT RKRRKVHTEE  300
DGSETRWHKT GKTRPVLANG AVKGFKKILV LYTNYGRQRK PEKTNWVMHQ YHLGNNEEEK  360
DGELVLSKVF YQTQPRQCGT GTPSIRDGGP PLLNPFDSHH YKGQVNIRSG QDGIPLPLPP  420
KKAGVMEYYN HNHPGPFMNY EHPHLIQGGQ NREIPAQLIP NMVLQGDGSS LFRYNAADTS  480
KGN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29766.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293895.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
TrEMBLA0A1L1Y2870.0A0A1L1Y287_9ROSA; NAC transcription factor 1
STRINGXP_004293895.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73