PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29752.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HB-other | ||||||||
Protein Properties | Length: 1784aa MW: 199683 Da PI: 4.9675 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 31 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk mrna29752.1-v1.0-hybrid 31 PKRQMKTPFQLEALEKAYAVETYPSESIRAELSEKLGLSDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-19 | 9 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-16 | 16 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-18 | 29 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-16 | 31 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.26E-14 | 32 | 87 | No hit | No description |
SMART | SM00571 | 1.7E-20 | 563 | 622 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.873 | 563 | 622 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.7E-17 | 564 | 619 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.7E-16 | 745 | 813 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.3E-5 | 963 | 1007 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.5E-12 | 1143 | 1234 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1784 aa Download sequence Send to blast |
MEGSEGDNQN RNHENSNSKL NNSGDGGGGK PKRQMKTPFQ LEALEKAYAV ETYPSESIRA 60 ELSEKLGLSD RQLQMWFCHR RLKDKKEGGS GSGPGPGPGP GPGPAKKQRK AVAVLPEPPI 120 DDLAHGSEPG SDYGSGSGSG SSPFGHADRN VVSRNVVVVE DVPRTRHYGS QQSITELRAI 180 AIVEAQLGEP LREDGPVLGI EFDPLPPDAF GAPLGILLSS QCFISANPFV LLLYESVAEQ 240 QKRNESKPNK GTPRSLHEYP YLQDHSSVRP DVYGHVAQSH FRDSAIDGPN ARTSPFASGN 300 EQLPRVHGGH GRARLLSQQE RQAVTFASPG DDGLPQRDAF INGRMSTQYS EPPFIAPESS 360 NVLSDGQIND TMLRMERKRK GEDVRMAKEV EAHEVRIRKE MEKQDILRRK NEERIRREME 420 RQDRERRKEE ERLMRERQRE EERSKKEQKR ENERREKFLQ KENIRAEKRR QREELRKERE 480 EVRRKAALEK ATARRLLNKS MELYEDEQLE LMELAAASKG LSSIISIDPD TNLDAFRDDL 540 TAFPPKSVLL KRPFAVHPWI DSEENIGNFL MVWRFLITFA DILELWPFTL DEFVQAFHDY 600 DSRLLGEIHV ALLRLIIKDI EDVARTPSTG LGLNQNGAAN PGGGHPQIVE GAYAWGFDIR 660 NWQQHLNLLT WPEIFRQLAL SAGFGPQLKK RSISWSYLPD NDEGKGCHDV ISTLRNGSAA 720 ENAFAIMQEK GLLAPRRSRH RLTPGTVKFA AFHVLSLEGN KGLTVLELAE KIQKSGLRDL 780 TTSKTPEASI SVALTRDTKL FERIAPSTYR VRSAYRKDPT DAEAILTAAR KKVQIFETGI 840 LAAEDVDEVE RDDVEEVERD EDSECDDVDE DPEVDDLATP AIVKKSPDQY NEVTPFSENG 900 QEDVCNDVAQ NVQNEMDKDV SPIPVSASKE ADGPSASSKQ CVSGVEVSTS NLDQDNMEID 960 ESKAGESWVQ GLTEGDYSDL SVEERLNSLV SLIGIANEGN SIRVVLEDRL EAANALKKQM 1020 WADAQLDKSR LKEENVSRLD IPSFMVGKAE HVTGVEDGQS PLLDIDSRIN EEGAAENQSS 1080 NHGSQVILNH LHGVPIERAL VPQDISMGPE NILNQQLAYA SKKSRSQLKS YIAHKAEEMY 1140 AYRSLPLGQD RRHNRYWQFV ASASSSDPGS GRIFIELNNG NWRLIDTEEM GLRDWCVLLP 1200 GKFTVTAEAF DTLLMSLDTR GIRESHLRLM LQKIEASFKE NVRKNVHLSS RNRVKKEADD 1260 MDSSPDYPSS FDSPGSTVSA LNSEMGETSS SFRIELNRNE NEKRAALRRY QDFQKWMWRE 1320 CFSTSALCAS KYGQKRCRQL FDLCDFCLCC YHFEDSHCSF CHQTFGATYE NLDFSEHVIQ 1380 CKERRNLETC DIHVPGISVP LASRLLKAFI TLVEVSVPPE ALQSFWTEDC RKTWGAKLNA 1440 SSSVEELLQM LTLFETAIKR DFVSSNFAAT DELLGSGKQS AIANSDNLDT KSISVLPWIP 1500 HTTAAVALRV YEMDSAITYV PHEKPEPNGD KEVGEHIKIP LRFTPMRNDR EFEPAASDLN 1560 EQSTHLKSAR NSLKRGRGGR EQGRGKKSKS GGSRRKARGN EIENMRQGLG PVGRRPQGQG 1620 SGRGRRTVRK RRMKNSAVEG TLIGHTTDLR SSPDSGEESP RNLAGEWDDE NINMIHMKGD 1680 ERGERYEQAE ALESEDEDQA VGYEQGNWEI GFDGISGGWN GGLQEPSDED MGASEDDNNG 1740 IEEVREEDSE GDVEMSDASD EVPNRIINDD GSDSASDDDD YSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 86 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29752.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU603405 | 1e-170 | EU603405.1 Rosa hybrid cultivar putative homeobox transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293789.1 | 0.0 | PREDICTED: uncharacterized protein LOC101298204 isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2P6Q498 | 0.0 | A0A2P6Q498_ROSCH; Putative transcription factor & chromatin remodeling DDT family | ||||
STRING | XP_004293789.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | mrna29752.1-v1.0-hybrid |