PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna29738.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27488.7 Da PI: 10.242 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ mrna29738.1-v1.0-hybrid 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 73 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-22 | 23 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 23 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-18 | 23 | 81 | No hit | No description |
Pfam | PF00847 | 5.2E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-39 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MAPRTEKSAA VSAKGNNNVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 RAYDAAAREF RGAKAKTNFP IPSENVNLSL FKKKVNVNNG GNSNSRSPSQ SSTVESSSRE 120 PALMVESSPL DLNLGHGVAG FGAPMRFPFQ HPHHQIPPVG AVIGVPTAAA NHVLYFDSVF 180 RAGMVKNHQQ YQQQLRFDRN LMHRDFLSGG GFTGGSQSDS DSSTVVDLNQ HDLPRAGGGF 240 DLDLNLPPPV ELA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 23 | 81 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-21 | 19 | 81 | 1 | 64 | ATERF1 |
3gcc_A | 8e-21 | 19 | 81 | 1 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna29738.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX046822 | 2e-46 | JX046822.1 Callerya speciosa microsatellite Ndl_004 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293846.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3S8T986 | 0.0 | A0A3S8T986_FRAAN; Transcription factor ERF61 | ||||
STRING | XP_004293846.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-28 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna29738.1-v1.0-hybrid |