PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29735.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 18122.5 Da PI: 10.2652 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8e-21 | 9 | 60 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ mrna29735.1-v1.0-hybrid 9 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 60 68********.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-14 | 9 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.92E-29 | 9 | 68 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 10 | 68 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 10 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 10 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 10 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAGSVPGQPH YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF DTPEEAALAY DGAARSLRGN 60 KAKTNFPAPL TRGGGGGEDL SLDLNVSSAQ WASHSGRLVE FLHTGVLKDV AKSENAAAAP 120 SFVVSRAPRA PVVGSSLVQE GSSTASYLGF VRRGLPIDLN EPPPLWLCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 10 | 73 | 5 | 69 | ATERF1 |
3gcc_A | 9e-22 | 10 | 73 | 5 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29735.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295554.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 6e-47 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A3S8T913 | 1e-115 | A0A3S8T913_FRAAN; Transcription factor ERF60 | ||||
STRING | XP_004295554.1 | 1e-119 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-49 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | mrna29735.1-v1.0-hybrid |