PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29733.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 774aa    MW: 85167.9 Da    PI: 6.4283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29733.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-08236254625
                              -SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                              C+f+a+ G+C +G +C+F+H
  mrna29733.1-v1.0-hybrid 236 CDFYAK-GWCIRGTSCRFIH 254
                              ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-6230255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192230257IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5235254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MELHGGSPSD GSVRILYWRD GGVGPTGEST VLSIPAARSP PPIMSDSDDD QSPALAQLSD  60
EDEDPEEVEQ VDQELEEQRD EVDMDISNSP IQVHHRDERR EDIKYEGLGG QWGPGSSTWG  120
KAEARPPSNI LDMAESTSNF NFAGTSNAAL RLKPQKTFAG ARNDARILSG KKTSTHHTES  180
QDHVKNGINS KDEMQQVVQS TNDGKQMESR SAASERGTHI MSPETNDPNK RPAIVCDFYA  240
KGWCIRGTSC RFIHTKDSPN NSHPQPEGDA AAASCSKEVK VDEGLRVIPE RSRLPGFHDP  300
LASSSGYSFP LPSHLGVPGH HQLQSVQYEE PNVGDSADVQ KLHLHKDDLV FLTSYKDVGK  360
DDQIRNRPTD KYNNSPNKKG RYSTGNTSSH SSSMEDLAGV WRQRVHGDHT SPLVSHSLNT  420
GSNTLIATGL FPSSRISNWT GFSLPASYSN LDAHPVGSRK LLDSNRDYHA YTRPSAFLKS  480
SELNTVSQHS AELKTKISSN NWEPSVPFRP SCILPSAFLS FSAQQYDPLR SRIELPKLAN  540
NSFEASFYSE GATAGKRLHQ KVLPETVGGT RPPACDADTN SMSSHNTYQE KVLDNSCYTR  600
DPTSPVTETE TVGISVVYQN GTLTKDENPM GHSQVKGSTN PNKISICGDS RHQSDGSSSH  660
QRDIKVDKFR ENNEVEGEHL TDGDVQQESK EMKQFRGALI ELVKELLKPK WREGSLSKDA  720
HNKIVKKAVD KILSAFQPQQ IPPTLEAVTQ YLSACRPKIS KLVEGYIERY GKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29733.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460575.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A2P6Q4770.0A0A2P6Q477_ROSCH; Putative transcription factor C3H family
STRINGXP_004293802.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-39C3H family protein