PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29726.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SBP

Protein Properties

Length: 158aa MW: 17887.7 Da PI: 7.8446

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29726.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.7	1.5e-42	77	153	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C+adls+ak+y+rrhkvC++hskapvv++ gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk+++ mrna29726.1-v1.0-hybrid 77 CQAQSCNADLSDAKQYYRRHKVCDFHSKAPVVVIGGLRQRFCQQCSRFHDLSEFDENKRSCRRRLAGHNERRRKNSS 153 **************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	4.9E-57	1	157	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	3.1E-35	70	138	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.12	74	151	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-39	75	154	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-32	77	150	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MEPNKAQGKR SLNLDIEEEE EEEEADEDED HTSRPSVLVH GEDDRRKRVM VMNSASATSP 60 SKKGSAAGGS MTTRPSCQAQ SCNADLSDAK QYYRRHKVCD FHSKAPVVVI GGLRQRFCQQ 120 CSRFHDLSEF DENKRSCRRR LAGHNERRRK NSSDYPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-34	77	150	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29726.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293885.1	1e-114	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38741	6e-45	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A2P6Q483	1e-83	A0A2P6Q483_ROSCH; Squamosa promoter-binding-like protein
STRING	XP_004293885.1	1e-113	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-41	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	mrna29726.1-v1.0-hybrid

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]