PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29704.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 278aa MW: 30429.6 Da PI: 4.9771

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29704.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.7e-31	81	139	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY++eHnh+ mrna29704.1-v1.0-hybrid 81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLMVTYSSEHNHP 139 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-32	73	141	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-27	77	141	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	80	140	IPR003657	WRKY domain
PROSITE profile	PS50811	32.374	81	141	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	82	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGSPTFFNKH FMSDIDHDDY NTATTSTPEN SSGSPPPPPA FNDVVYSKIA SSPKKSSRRA 60 IQKRVVSIPI KENSNTNTPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER 120 SRADPTMLMV TYSSEHNHPW PASRSHHGAK PQTKTEVREE EEEETAAAQP EPDPEERRFA 180 DLGGDEEPAL VIIPSAADEF GWFAADMETT SSRVLESPIF TESGGPDFGD VAGMVFPMGE 240 EDESLFADLG ELPECSFVFR HRRVGGGGGV GPQVQIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-22	63	142	6	80	Disease resistance protein RRS1
5w3x_D	6e-22	63	142	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29704.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295586.2	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	3e-77	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2P6Q4V8	1e-158	A0A2P6Q4V8_ROSCH; Putative transcription factor WRKY family
STRING	XP_004295586.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	6e-76	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	mrna29704.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]