PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29666.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 319aa    MW: 35189.1 Da    PI: 4.7433
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29666.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.85e-1732119186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++ +++     s++p+
  mrna29666.1-v1.0-hybrid  32 CWSEDATSTLIDAWGRRYVELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSGG---FNSSWPF 114
                              7****************************************99999***************************997...5667*** PP

                 trihelix  82 fdqle 86 
                              fd+l+
  mrna29666.1-v1.0-hybrid 115 FDRLD 119
                              ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2730121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGDLTESLTP STATATPNSS SNPRPMPVRE DCWSEDATST LIDAWGRRYV ELNRGNLRQK  60
DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKVE KARVSGGFNS SWPFFDRLDS  120
LIGSTVKKPS PSLSPPVAVP LPLAYRKPSP ARPVVTAVAL PQKRSASAAA LNEGFFRMNY  180
SAVAAAAAAE NDDDDDEDEE DEEEEEDNDD GDEEAEVEKE RDSDGEIGGG GGGGVGGEGL  240
KRLARAIERF GEVYQRVEAD KIRQMTELEK QRMQFAKDLE IQRMSMFMDT QVQLERIKHG  300
KRPGSNGEPN LSALFCML*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29666.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460607.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X2
TrEMBLM5WGJ41e-140M5WGJ4_PRUPE; Uncharacterized protein
STRINGXP_004293944.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-40sequence-specific DNA binding transcription factors