PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29662.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 171aa MW: 19189 Da PI: 9.151

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29662.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	51	109	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k mrna29662.1-v1.0-hybrid 51 PEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKP 109 68999***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	50	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	53	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010214	Biological Process	seed coat development
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:1902455	Biological Process	negative regulation of stem cell population maintenance
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAEVSSGQGA PGIKLFGTTI TLQQVVVKDD HHREQKKADD VHDQTVEMKR PEKIIPCPRC 60 KSMETKFCYF NNYNVNQPRH FCKGCQRYWT AGGALRNVPV GAGRRKSKPP CRELVGFPEP 120 CMYEASEVVH QFELEGVVEK WHVAAVQGDF RHVFPVVKRR RSGSGGQTCS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00166	DAP	Transfer from AT1G29160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29662.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006693	1e-40	AP006693.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT35C17, TM0399, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293942.1	1e-126	PREDICTED: dof zinc finger protein DOF1.5
Swissprot	O22967	6e-56	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A2P6Q4P0	1e-108	A0A2P6Q4P0_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004293942.1	1e-125	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6483	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	3e-58	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna29662.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]