PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29546.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 735aa    MW: 80035.8 Da    PI: 5.9131
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29546.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.56.3e-23642704163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr++rkq+NRe+ArrsR+RK+ae+eeL++ v  L++eN+ Lk+el++l++e++kl se+
  mrna29546.1-v1.0-hybrid 642 ERELKRQKRKQSNRESARRSRLRKQAECEELQKSVHGLTNENHGLKDELQRLSQECEKLASEN 704
                              89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.209.4E-1944119No hitNo description
SuperFamilySSF561124.18E-7247334IPR011009Protein kinase-like domain
SMARTSM002203.8E-6054316IPR000719Protein kinase domain
PROSITE profilePS5001143.65154316IPR000719Protein kinase domain
PfamPF077142.1E-5555312IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CDDcd139991.36E-9960312No hitNo description
Gene3DG3DSA:1.10.510.101.3E-53120314No hitNo description
PRINTSPR001094.3E-13130143IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001094.3E-13168186IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001080174186IPR008271Serine/threonine-protein kinase, active site
PRINTSPR001094.3E-13241263IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001094.3E-13283305IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PfamPF077778.7E-32392485IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.7E-21637701No hitNo description
SMARTSM003381.4E-22642706IPR004827Basic-leucine zipper domain
PfamPF001702.4E-20642704IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.725644707IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.38E-11645701No hitNo description
CDDcd147021.68E-21647697No hitNo description
PROSITE patternPS000360649664IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MAGSGVFTVT DNDLFDYFPE NNAGKDDEGC VLSAKGSNFV FNLDQSLLID ASCVVIGQVL  60
GEGPQSIVYE GLYNSKPVAV KIIQPDETGL INPERKEKFQ REVTLLSKAK HDNIVKFIGA  120
SVEPIMMIVT ELMRGGTIQK YLWGTRPVVL DLKLSISFAL DICRAMEYLH ANGIIHRDLK  180
PSNLLLSENK KQVKLADFGL AREQIEGAMT SEAGTYRWMA PELFSIEPVP KGAMKEYDHK  240
ADVYSFSIVL WELLTNKTPF KGRNNIMVAY ATANNVRPNL EDIPKEITPL LKSCWAEDPK  300
DRPEFMEVTD FLSKFYQEHC LKETKPPPKA IETESNERNI EEHNEKSIKE EESLSTSKPH  360
VNEKLEEEKW VKRRKKSWSS SCRGVFAETI EMGTGEEGTP SKPSKQASTA QEIPTQPSYP  420
DWSSSMQAYY GAGAAPPPFF ASSVGSPAPH PYMWGAQHPM MPPYGTPVPY PAIYPPGGVY  480
AHPGMVTTPA SVPPTNPESE GKSTDGKERA SAKKPKGAAG LVSGKAGDGG KATSGSGNDG  540
ASQSAESGSE GSSDGSEENG NHQEYGANKK GSFDKMLADG ANAQNNTGSV PGKPVVSMPA  600
TSLNMGMDLW NPSPAGAGTA KMRGNQSGAP SAVGGDHWIQ DERELKRQKR KQSNRESARR  660
SRLRKQAECE ELQKSVHGLT NENHGLKDEL QRLSQECEKL ASENTSIKEE LTRLCGPDLV  720
ANIEHQSHGG EGNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4uy9_A1e-40453232291MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9
4uy9_B1e-40453232291MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368374KWVKRRK
2658664RRSRLRK
3658665RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29546.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301888.10.0PREDICTED: serine/threonine-protein kinase HT1-like
TrEMBLA0A498KG460.0A0A498KG46_MALDO; Uncharacterized protein
STRINGXP_004301888.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-87G-box binding factor 1