PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29525.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BES1
Protein Properties Length: 323aa    MW: 34857.9 Da    PI: 9.2488
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29525.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822219.76.6e-6851521146
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              g+sgr ptwkErEnnkrRERrRRaiaakiy+GLRaqG yklpk++DnneVlkALc+eAGwvve+DGttyrkg+kp+   e+ag+ +
  mrna29525.1-v1.0-hybrid   5 GSSGRLPTWKERENNKRRERRRRAIAAKIYSGLRAQGSYKLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGCKPP--IEIAGTPT 88 
                              689*************************************************************************..9******* PP

                   DUF822  87 saspesslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslv 146
                              ++s +ss+q s++ss+++spv+sy+asp+sssfpsp+++d ++++ +    + llp+l++l+++
  mrna29525.1-v1.0-hybrid  89 NMSACSSMQPSPQSSSFPSPVPSYHASPSSSSFPSPTRFDGNPSSYHqnpsSYLLPFLHNLASI 152
                              ****************************************999876667778889999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.4E-656149IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTGGGSSGRL PTWKERENNK RRERRRRAIA AKIYSGLRAQ GSYKLPKHCD NNEVLKALCA  60
EAGWVVEEDG TTYRKGCKPP IEIAGTPTNM SACSSMQPSP QSSSFPSPVP SYHASPSSSS  120
FPSPTRFDGN PSSYHQNPSS YLLPFLHNLA SIPPNLPPLR ISNSAPVTPP LSSPTSRGSK  180
RKPDWESLTN GCINSLRHPL FAASAPSSPT RRHHLAPATI PECDESDAST VDSGRWVSFQ  240
TGVPSVAPPS PTFNLMKPVA EQNVLRQTVG HGGIGWGNPG ERARGSEFEF ESGRLKAWEG  300
ERIHEVGVED LELTLGNGKM HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-29986372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-29986372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-29986372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-29986372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29525.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300602.10.0PREDICTED: BES1/BZR1 homolog protein 2
SwissprotQ94A431e-117BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLM5VR331e-176M5VR33_PRUPE; Uncharacterized protein
STRINGXP_004300602.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127534105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.22e-89BES1 family protein