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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | mrna29447.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | B3 | ||||||||
| Protein Properties | Length: 1022aa MW: 114955 Da PI: 4.9711 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 33.9 | 5.5e-11 | 20 | 96 | 14 | 97 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
l +p f++ + g+++ + l ++g+ W v++ +k ++++++ GW++Fv++ngL g+ ++F + g+s+f +v vf
mrna29447.1-v1.0-hybrid 20 FKLKIPSAFLQCFnGSVPSQ---CCL-RTRGKGWIVYV--EKVNNKFYFQLGWNDFVQDNGLVCGERLLFDYAGNSQF--HVEVF 96
45889999995545555443...444.569********..999999****************************9*99..88887 PP
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| 2 | B3 | 43.7 | 4.8e-14 | 324 | 413 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
l+ +++ s l +p +fae+h ++ +++++tl++e r W vk++y ++ + l++GW +F+ +n+Lk+gD +vF l++
mrna29447.1-v1.0-hybrid 324 VSLSATYAGGSF-LAVPCSFAEKHlKYRQPGHITLRVEK---RFWYVKVNYLRN--ITRLQAGWTKFALDNNLKTGDACVFVLTNA 403
555556666665.999********977777776666555...9******55555..466***********************9988 PP
SEE..EEEEE CS
B3 88 sefelvvkvf 97
efe+ v +f
mrna29447.1-v1.0-hybrid 404 IEFEYDVAIF 413
9999988887 PP
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| 3 | B3 | 41 | 3.4e-13 | 588 | 664 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
+r +p+ f+++++g+ +e+ +l++ + ++W v + + ++++++GWkeFv++ngLk ++f+vF +dg sef +v+++
mrna29447.1-v1.0-hybrid 588 RRPKIPRAFLRHFDGNVPEQCQLRILT---QTWLVDI--EMDNHKFYFQNGWKEFVHENGLKGREFLVFFYDGISEF--YVHIY 664
5668******99966666766888777...9******..555556**************************998999..88886 PP
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| 4 | B3 | 39.7 | 8.4e-13 | 904 | 992 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
++ps+v++ +++ +p fae+h +k ++s + l+ + rsW + l ++ + l++GW++F++an+LkegD++v+ l+++ +
mrna29447.1-v1.0-hybrid 904 MSPSHVHA-AWVHFPCLFAERHLKK-HCS-CINLR-VNTRSWCISL--YHVKKFVRLQTGWRQFAQANNLKEGDVCVLVLIDNIKY 983
45555555.57999999**999544.444.34443.467*******..77777999***********************9998666 PP
..EEEEE-S CS
B3 91 elvvkvfrk 99
+ v++fr+
mrna29447.1-v1.0-hybrid 984 VFDVTIFRA 992
578888876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.75E-17 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.57E-8 | 8 | 96 | No hit | No description |
| SMART | SM01019 | 0.0025 | 9 | 99 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.5E-9 | 20 | 96 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.66 | 45 | 99 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 316 | 406 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.34E-16 | 319 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.27E-16 | 320 | 413 | No hit | No description |
| PROSITE profile | PS50863 | 11.744 | 321 | 416 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.5E-8 | 322 | 416 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.0E-11 | 325 | 413 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.7E-6 | 582 | 667 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.15E-10 | 584 | 664 | No hit | No description |
| SuperFamily | SSF101936 | 7.46E-15 | 586 | 672 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-14 | 589 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 5.5E-11 | 589 | 664 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.223 | 615 | 667 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 5.8E-20 | 893 | 993 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 5.1E-19 | 893 | 993 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.03E-14 | 898 | 991 | No hit | No description |
| PROSITE profile | PS50863 | 10.785 | 899 | 993 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 7.4E-5 | 900 | 993 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.5E-10 | 904 | 991 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1022 aa Download sequence Send to blast |
MATERNQSFI RVLQGDRFSF KLKIPSAFLQ CFNGSVPSQC CLRTRGKGWI VYVEKVNNKF 60 YFQLGWNDFV QDNGLVCGER LLFDYAGNSQ FHVEVFGINT CKKLCVPEME EANEHQDEIS 120 LDILDDFPPC PRKIQDKSLL SSHLPHKRNK TSSSGKADIT LSFPKRFPHL EKSAMKKKDA 180 HWFKSEMINI SDNDSCDHDE KEYEDDVHNE EDEDENEDGD EEEEEEEEEE EEEEEEEEET 240 EDEEMEEEDD DSVETHNESS RCSRKVGKLA SILHQRKRKS SNAKAKTKVN AAGGLSGEEK 300 ILGAIALQRA NIFKSNSVDP CFVVSLSATY AGGSFLAVPC SFAEKHLKYR QPGHITLRVE 360 KRFWYVKVNY LRNITRLQAG WTKFALDNNL KTGDACVFVL TNAIEFEYDV AIFHITDAKP 420 SNTGNVVLDR ALVVALALVT LRSALRARCS ALVNRCSVLG CRPLAVDIWR SPLGLTEADL 480 VLSLLLSVGD ECSSDFFKSQ GEKVSGLEEG VRILSCSVAS LQQIGVPNSV LEDGELCWAA 540 EEALGAQSNF LVWAWVLDNG LEVSVTGYKG NFGDRSPAVE EIPVTRVRRP KIPRAFLRHF 600 DGNVPEQCQL RILTQTWLVD IEMDNHKFYF QNGWKEFVHE NGLKGREFLV FFYDGISEFY 660 VHIYGENACK KEFAEVTRNY VASFREMEEA DSDDTSVEIL DDFPPSSRRA GLGNKSSLPS 720 HQTHKKDGTS WSNKAVNGAM YKKSGTTSID GFPAEQFVGG TSSSKRLVQP ELEALGRMHI 780 DDDDDDKEEE SEEDETEADS ENEDEEEEEE SDGDEEKSDD SIEILYEFPQ CSKAKTMRKS 840 SGLHKGKINS SKAKPQSSIT GASGSSSNKK ITVMKHKGTG DIIARCRASD FISKSDKPSC 900 SIAMSPSHVH AAWVHFPCLF AERHLKKHCS CINLRVNTRS WCISLYHVKK FVRLQTGWRQ 960 FAQANNLKEG DVCVLVLIDN IKYVFDVTIF RATEAANCTL PGGRQITEVQ FKSKKEKEKA 1020 G* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 274 | 279 | QRKRKS |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna29447.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004300566.2 | 0.0 | PREDICTED: uncharacterized protein LOC101310520 | ||||
| TrEMBL | A0A2P6RMW9 | 1e-164 | A0A2P6RMW9_ROSCH; Putative transcription factor B3-Domain family | ||||
| STRING | XP_004301867.1 | 0.0 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF26254 | 2 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G06220.1 | 1e-13 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna29447.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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