PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29446.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 462aa    MW: 52563.9 Da    PI: 6.7464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29446.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67e-1120951799
                             E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              +p +f++++ g+++++     l+ +  r+  v +  +   ++++++kGW+eF ++ng+k g  +vF++ g+s f  +v +f k
  mrna29446.1-v1.0-hybrid 20 KIPTEFLQHFhGNVPHQ---CHLQ-TAARTCLVHV--EVVNNKFYFQKGWNEFLQENGVKYGQLLVFHYGGNSHF--HVDIFGK 95
                             57888885554444433...3333.4667778888..666667**************************999999..**99987 PP
2B335.71.5e-113514301697
                              EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              + +p +f e++  +  ++++ l +e+   +s+ +++  +  ++++ l++GW+eF++ n+Lk gD++vF l+++++fe+ v +f
  mrna29446.1-v1.0-hybrid 351 VNFPCSFSEKYiTERRPNHIILWVES-VEKSFWINV--NYIGRTTRLQAGWSEFARVNNLKMGDVCVFVLTNTKTFEFDVEIF 430
                              67788888888532323333333333.336666666..44555566************************999****999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.827196IPR003340B3 DNA binding domain
SMARTSM010190.015796IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-142098IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-142098IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-82195IPR003340B3 DNA binding domain
CDDcd100173.47E-85493No hitNo description
Gene3DG3DSA:1.10.601.105.0E-4221289No hitNo description
Gene3DG3DSA:2.40.330.109.4E-17330431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-16331431IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-13335430No hitNo description
PROSITE profilePS508639.925336433IPR003340B3 DNA binding domain
SMARTSM010190.0011337433IPR003340B3 DNA binding domain
PfamPF023621.9E-8349430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
METSAALWEP KTKLTLWLKK IPTEFLQHFH GNVPHQCHLQ TAARTCLVHV EVVNNKFYFQ  60
KGWNEFLQEN GVKYGQLLVF HYGGNSHFHV DIFGKNTCGE LFVMPETEVS LEISDESPVS  120
SPLPSSSEKD RGGTSSTQRF IEKGLWEARI RAEAFKSENP SAFLVSMKPS YMKFKFVVRP  180
CKLWLPAEFT MLVKPFIENS GDVFIRVSNG RVRTWRAQLT CDNVATKRCK LHDIFDNEDH  240
ENDEEGDDES EDEEETEDEE EEEEDDDSSE TLSCVPLGSR TVSSRLHKRR RNWTSSIAKS  300
QSNIKSGGGL SRAERTLNAI ALGKANAFKS ESASPSFVVS LGSSYAGGSY VNFPCSFSEK  360
YITERRPNHI ILWVESVEKS FWINVNYIGR TTRLQAGWSE FARVNNLKMG DVCVFVLTNT  420
KTFEFDVEIF HLTDVCTSSQ GKRKQLRTDS THRKQKSRKN Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29446.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299322.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_011464332.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
STRINGXP_004301866.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2615523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-09B3 family protein