PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29445.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 702aa    MW: 80532.6 Da    PI: 6.9566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29445.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-18199292296
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              fkv ++s + ++++l+lpk f++++  k  ++++  l+ + g +sW vkl+y+  +gr+ +++GW +Fv++  LkegD++ F l++
  mrna29445.1-v1.0-hybrid 199 FKVPMHSTYINHNLLWLPKAFVKTYLVK--QPTDAALKISGGkKSWPVKLRYEEAKGRVKFQSGWTDFVRDRSLKEGDICEFVLVD 282
                              578889*******************544..55677777766669***************************************997 PP

                              SSEE..EEEE CS
                       B3  87 rsefelvvkv 96 
                              +++  + vk+
  mrna29445.1-v1.0-hybrid 283 SKRHVFEVKI 292
                              6666556655 PP

2B340.64.4e-134315071799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                               lp kf++++gg+   s   +l+ ++g +Wev +  ++++++++++kGW++F     +  g f+vF ++g+s+f   v +f++
  mrna29445.1-v1.0-hybrid 431 KLPYKFVKKYGGE--LSSSASLKLPDGLEWEVDI--TRCDSKVWFEKGWENFSYFYSIGHGHFLVFGYQGNSKF--DVCIFDR 507
                              5899999999888..666899999**********..**********************************9999..9999997 PP

3B339.21.3e-126176951394
                              TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               g l++p  f +++    ++++ ++l++ ++ + W v + y+++ +r  l++GW +Fvk+n+L  gD +vF l++++ f + v
  mrna29445.1-v1.0-hybrid 617 GGYLYVPSVFSKTYLA--TQPTHIMLQTvSNKEPWCVDMHYERSACR--LRAGWPGFVKSNKLVLGDACVFVLKDSNAFLFDV 695
                              5779999999999953..36778*****555589*****88777776..***********************98878774444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1417115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-1522116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.17924117IPR003340B3 DNA binding domain
CDDcd100174.69E-1025115No hitNo description
SMARTSM010195.0E-525117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19193296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19194293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.563198296IPR003340B3 DNA binding domain
SMARTSM010195.0E-13199296IPR003340B3 DNA binding domain
PfamPF023622.1E-16199292IPR003340B3 DNA binding domain
CDDcd100178.29E-18199292No hitNo description
Gene3DG3DSA:2.40.330.106.5E-17389508IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-7395508IPR003340B3 DNA binding domain
CDDcd100174.44E-12395506No hitNo description
PROSITE profilePS5086311.406415508IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-16431507IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-10431507IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-16599693IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17600696IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-10604699No hitNo description
PROSITE profilePS5086312.21605699IPR003340B3 DNA binding domain
SMARTSM010191.6E-8606701IPR003340B3 DNA binding domain
PfamPF023621.0E-10611693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MASSYVRRKC ADHRPSSSAT TPRRFLEVIL DDTSRERKLR IPKSFLDIYG EDLSNWVYFK  60
LPYGPELDIG LTSFNGEVWF RKGWPEFSKL YSLEKGYSLI FGYEGNSRFQ VSIFDGSNNM  120
EIDYTTRRML GSEESDQDDD ISLDISEDIR PNVDSEERVK KETHWSKSEM LRKNQFVAER  180
HGGGKARLFQ RAKSYNCSFK VPMHSTYINH NLLWLPKAFV KTYLVKQPTD AALKISGGKK  240
SWPVKLRYEE AKGRVKFQSG WTDFVRDRSL KEGDICEFVL VDSKRHVFEV KITTANHTLS  300
PDIDDGNDEE DEQEDEDSDD ESIEILDHFP PHLETKEKSP LESQPRKRKR HSSRTLIDIF  360
PEERPVVPRK MHPPITASSG KVPRANGFES ANPDFKILLK PAYIHGNYLY MPAKFAKRYL  420
VKQPGHAILQ KLPYKFVKKY GGELSSSASL KLPDGLEWEV DITRCDSKVW FEKGWENFSY  480
FYSIGHGHFL VFGYQGNSKF DVCIFDRTAT EIDYSRTVED DDSSGEILED CLRGSRNSGS  540
VSRKKNRNNS TGKPEMDDNN DEGDVGSEEG EDEDNHSRRM HPVTSSIRKE IALQRAKDYE  600
PALPHFVIAI RTSSIPGGYL YVPSVFSKTY LATQPTHIML QTVSNKEPWC VDMHYERSAC  660
RLRAGWPGFV KSNKLVLGDA CVFVLKDSNA FLFDVVFYRA T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29445.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465844.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RMY31e-150A0A2P6RMY3_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301864.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein