PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29445.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 702aa MW: 80532.6 Da PI: 6.9566 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57 | 3.5e-18 | 199 | 292 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 fkv ++s + ++++l+lpk f++++ k ++++ l+ + g +sW vkl+y+ +gr+ +++GW +Fv++ LkegD++ F l++ mrna29445.1-v1.0-hybrid 199 FKVPMHSTYINHNLLWLPKAFVKTYLVK--QPTDAALKISGGkKSWPVKLRYEEAKGRVKFQSGWTDFVRDRSLKEGDICEFVLVD 282 578889*******************544..55677777766669***************************************997 PP SSEE..EEEE CS B3 87 rsefelvvkv 96 +++ + vk+ mrna29445.1-v1.0-hybrid 283 SKRHVFEVKI 292 6666556655 PP | |||||||
2 | B3 | 40.6 | 4.4e-13 | 431 | 507 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp kf++++gg+ s +l+ ++g +Wev + ++++++++++kGW++F + g f+vF ++g+s+f v +f++ mrna29445.1-v1.0-hybrid 431 KLPYKFVKKYGGE--LSSSASLKLPDGLEWEVDI--TRCDSKVWFEKGWENFSYFYSIGHGHFLVFGYQGNSKF--DVCIFDR 507 5899999999888..666899999**********..**********************************9999..9999997 PP | |||||||
3 | B3 | 39.2 | 1.3e-12 | 617 | 695 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 g l++p f +++ ++++ ++l++ ++ + W v + y+++ +r l++GW +Fvk+n+L gD +vF l++++ f + v mrna29445.1-v1.0-hybrid 617 GGYLYVPSVFSKTYLA--TQPTHIMLQTvSNKEPWCVDMHYERSACR--LRAGWPGFVKSNKLVLGDACVFVLKDSNAFLFDV 695 5779999999999953..36778*****555589*****88777776..***********************98878774444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-14 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-15 | 22 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.179 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.69E-10 | 25 | 115 | No hit | No description |
SMART | SM01019 | 5.0E-5 | 25 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-19 | 193 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 194 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.563 | 198 | 296 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-13 | 199 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 199 | 292 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.29E-18 | 199 | 292 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.5E-17 | 389 | 508 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.9E-7 | 395 | 508 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.44E-12 | 395 | 506 | No hit | No description |
PROSITE profile | PS50863 | 11.406 | 415 | 508 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.28E-16 | 431 | 507 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.2E-10 | 431 | 507 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-16 | 599 | 693 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-17 | 600 | 696 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.91E-10 | 604 | 699 | No hit | No description |
PROSITE profile | PS50863 | 12.21 | 605 | 699 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-8 | 606 | 701 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-10 | 611 | 693 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MASSYVRRKC ADHRPSSSAT TPRRFLEVIL DDTSRERKLR IPKSFLDIYG EDLSNWVYFK 60 LPYGPELDIG LTSFNGEVWF RKGWPEFSKL YSLEKGYSLI FGYEGNSRFQ VSIFDGSNNM 120 EIDYTTRRML GSEESDQDDD ISLDISEDIR PNVDSEERVK KETHWSKSEM LRKNQFVAER 180 HGGGKARLFQ RAKSYNCSFK VPMHSTYINH NLLWLPKAFV KTYLVKQPTD AALKISGGKK 240 SWPVKLRYEE AKGRVKFQSG WTDFVRDRSL KEGDICEFVL VDSKRHVFEV KITTANHTLS 300 PDIDDGNDEE DEQEDEDSDD ESIEILDHFP PHLETKEKSP LESQPRKRKR HSSRTLIDIF 360 PEERPVVPRK MHPPITASSG KVPRANGFES ANPDFKILLK PAYIHGNYLY MPAKFAKRYL 420 VKQPGHAILQ KLPYKFVKKY GGELSSSASL KLPDGLEWEV DITRCDSKVW FEKGWENFSY 480 FYSIGHGHFL VFGYQGNSKF DVCIFDRTAT EIDYSRTVED DDSSGEILED CLRGSRNSGS 540 VSRKKNRNNS TGKPEMDDNN DEGDVGSEEG EDEDNHSRRM HPVTSSIRKE IALQRAKDYE 600 PALPHFVIAI RTSSIPGGYL YVPSVFSKTY LATQPTHIML QTVSNKEPWC VDMHYERSAC 660 RLRAGWPGFV KSNKLVLGDA CVFVLKDSNA FLFDVVFYRA T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29445.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465844.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A2P6RMY3 | 1e-150 | A0A2P6RMY3_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004301864.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29445.1-v1.0-hybrid |