PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29442.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 178aa    MW: 19571.8 Da    PI: 4.528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29442.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-1325113699
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                              +++ +l+ g l +p+  +++ g       ++ l+ ++g  W ++l  +k+ g+++l+kGW eF++   L+ g  ++F+++g+ s+ 
  mrna29442.1-v1.0-hybrid  25 VSAQALEDGKLEIPRAVVRQSGDL--LAEMILLKVPKGANWVIEL--TKSNGKIWLQKGWPEFARHYSLEHGSLLLFSFQGDySCL 106
                              5677889999********999755..555899999**********..**********************************98999 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                                +v++f++
  mrna29442.1-v1.0-hybrid 107 --RVQIFKR 113
                              ..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1817114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1818114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-1519112No hitNo description
PROSITE profilePS5086313.3120114IPR003340B3 DNA binding domain
SMARTSM010192.9E-621114IPR003340B3 DNA binding domain
PfamPF023622.8E-1125114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAIHRRRIQQ GSVVPVTAPS FIAIVSAQAL EDGKLEIPRA VVRQSGDLLA EMILLKVPKG  60
ANWVIELTKS NGKIWLQKGW PEFARHYSLE HGSLLLFSFQ GDYSCLRVQI FKRNTMEINY  120
PPLEMNYPPN SSITVEMNHA SSHDDGPDPF SDNDGPDADD ENGDNDDADD GGAHDGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29442.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300565.11e-130PREDICTED: B3 domain-containing protein At3g18960-like
TrEMBLA0A2P6RMY59e-71A0A2P6RMY5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004300565.11e-129(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-18B3 family protein