PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29439.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TALE | ||||||||
Protein Properties | Length: 217aa MW: 24764.2 Da PI: 6.7797 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.8e-10 | 125 | 162 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++++ LA+++gL+ +qV+ WF N R + mrna29439.1-v1.0-hybrid 125 FEHflHPYPSDADKQLLAQRTGLSRCQVSSWFVNARVR 162 665559******************************98 PP | |||||||
2 | BELL | 90.2 | 2.1e-29 | 2 | 56 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v+++F+ v+g +a pYt+lA+ka+SrhFrcLkda++ q+ mrna29439.1-v1.0-hybrid 2 QVDRRYNHYCEQMQMVVNAFDLVMGFRAAVPYTALAQKAMSRHFRCLKDAVTAQL 56 7***************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.1E-5 | 1 | 54 | IPR006563 | POX domain |
Pfam | PF07526 | 3.9E-25 | 2 | 53 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 103 | 166 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-8 | 106 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.22E-11 | 106 | 166 | No hit | No description |
SuperFamily | SSF46689 | 1.92E-16 | 107 | 173 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-26 | 109 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.0E-17 | 123 | 162 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQVDRRYNHY CEQMQMVVNA FDLVMGFRAA VPYTALAQKA MSRHFRCLKD AVTAQLKHSC 60 ELLGEKDGAG NSGITKGETP RLKMLEQSLR QQRAFHQMGM MEQEAWRPQR GLPERSVNIL 120 RAWLFEHFLH PYPSDADKQL LAQRTGLSRC QVSSWFVNAR VRLWKPLVEQ MFQQEADEEG 180 DVAAASVDQD QMSEQCYNTS DYPAETPMPP ATTTSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 5e-18 | 112 | 170 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 5e-18 | 112 | 170 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29439.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465433.1 | 1e-159 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_011465434.1 | 1e-159 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-108 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A2P6RMT6 | 1e-119 | A0A2P6RMT6_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004300564.1 | 1e-163 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-110 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna29439.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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