PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29414.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 816aa    MW: 87527.4 Da    PI: 7.23
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29414.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-095555921954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  mrna29414.1-v1.0-hybrid 555 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 592
                              664459******************************88 PP
2BELL91.21e-294324861872
                     BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkda++ q+
  mrna29414.1-v1.0-hybrid 432 KVDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAVTAQL 486
                              7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.6E-69352484IPR006563POX domain
PfamPF075262.1E-40357483IPR006563POX domain
PROSITE profilePS5007112.568533596IPR001356Homeobox domain
CDDcd000861.23E-12536597No hitNo description
SMARTSM003891.2E-9536600IPR001356Homeobox domain
SuperFamilySSF466893.29E-17538603IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28539602IPR009057Homeodomain-like
PfamPF059204.2E-18553592IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MGIATVQPLS PIFFSSKGTQ NNSISVSEKY SSSGNSMSQD YHQSIYSFPN GFERSAMTTH  60
QEQQQQQQHL AQQIRREKLR VQGFEPPPPP LVGGLDEEES GGLNPVYETA GMLSEMFNYP  120
AGVAPPAELL EHPMAASYRM ARPHQHQSAA AEWYGSRQNM VGGLGPLGDS NKNQSGRDNI  180
AAHQHQISTI NADSAAAMQL FLMNPQPRSP SPPPHSTSSS TLHMLLPNPS STTFPGAGGG  240
GGGGGAFGQF SWVSPDSHGH EGGSTTGPAH QLNTSSINPS DHHQQGLSLS LSTSLQHLEA  300
AKAEELRMGD NSGLLYYNNP EGSSSSAHFN QYKNLVGHQS QQVHVGFGSS SFGVVNVLRN  360
SKYVKAAQEL LEEFCSVGRG QLKKNKLGRQ SSSVNPSSNP AGTSGGGASS SSSKDAPPTL  420
SAADRIEHQR RKVDRRYNHY CEQMQMVVNA FDLVMGFGAA VPYTALAQKA MSRHFRCLKD  480
AVTAQLKHSC ELLGEKDGAG NSGITKGETP RLKMLEQSLR QQRAFHQMGM MEQEAWRPQR  540
GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE  600
MYQQEANEEG GGAGGAAAAA VSVDQDQRTE QRYNQNNTGD HRAQNPTPPP TTTTTTTTAM  660
SATTTTTTAT RSDINASEND PSLLAMNRQR SFSENQSTTT PTTYPSINMS TSTTATAPVE  720
QPVPYATTAD DTCRRGSLDY GTAASGNASS SSAAAAGDHQ SLHHHHAGST LISFGAATTT  780
AGDVSLTLGL RHAGGGNMPE KNTTSSFSIR DFGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16542600563Homeobox protein Meis2
3k2a_B2e-16542600563Homeobox protein Meis2
4xrs_A1e-16542599158Homeobox protein Meis1
4xrs_B1e-16542599158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29414.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300584.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_011465451.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_011465452.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-168BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2P6RMT60.0A0A2P6RMT6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004300584.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-152BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]