PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29391.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 333aa    MW: 34768.4 Da    PI: 8.8532
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29391.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.4e-3966123360
                   zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                              +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+
  mrna29391.1-v1.0-hybrid  66 SENLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKS 123
                              57899***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.6E-3368123IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2469120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.44169123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene3DG3DSA:3.40.50.7208.6E-479150IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIQELFGGAG FNIGGVAGGG GGGGAERKIS ISSSSTSLSA SPSPSPSSSA TTTTTAAAAA  60
GATANSENLR CPRCDSANTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK  120
NKSGTISTSI SKTAVAGKMK SMASEIGRSG FGLGFDHEVQ ASPILWGSPQ NSHILALLRS  180
STPNPNPNPN VQLCTNSVKE EGGMSMIGSH MMSESSGAGN DAMTARSTLG LDPLSSFWRN  240
NQNVQPPHQQ QNGNFILGHE VHSNQGIQEL FQRLRSSSSA SYYSHDLNNG VSSSSTSSIL  300
EAAPAVGGEL GYNWNPAFTW SDQLPTTNGA YP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29391.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300549.10.0PREDICTED: dof zinc finger protein DOF3.7-like
TrEMBLA0A2P6RN671e-176A0A2P6RN67_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004300549.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.15e-32Dof family protein