PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29391.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 34768.4 Da PI: 8.8532 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.4e-39 | 66 | 123 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ mrna29391.1-v1.0-hybrid 66 SENLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKS 123 57899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.6E-33 | 68 | 123 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-24 | 69 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 69 | 123 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 71 | 107 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:3.40.50.720 | 8.6E-4 | 79 | 150 | IPR016040 | NAD(P)-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MIQELFGGAG FNIGGVAGGG GGGGAERKIS ISSSSTSLSA SPSPSPSSSA TTTTTAAAAA 60 GATANSENLR CPRCDSANTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK 120 NKSGTISTSI SKTAVAGKMK SMASEIGRSG FGLGFDHEVQ ASPILWGSPQ NSHILALLRS 180 STPNPNPNPN VQLCTNSVKE EGGMSMIGSH MMSESSGAGN DAMTARSTLG LDPLSSFWRN 240 NQNVQPPHQQ QNGNFILGHE VHSNQGIQEL FQRLRSSSSA SYYSHDLNNG VSSSSTSSIL 300 EAAPAVGGEL GYNWNPAFTW SDQLPTTNGA YP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29391.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300549.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7-like | ||||
TrEMBL | A0A2P6RN67 | 1e-176 | A0A2P6RN67_ROSCH; Putative transcription factor C2C2-Dof family | ||||
STRING | XP_004300549.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7219 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 5e-32 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29391.1-v1.0-hybrid |