PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29354.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 308aa    MW: 34425.9 Da    PI: 9.6896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29354.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.22.9e-14172280589
                      NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekew..yfFskrdkkyatgkrknra........ 77 
                              +rF+Ptdeelv +yL++kve+k+++l e ik +diyk++Pwd+pk    v  + ++w  + F   +++++tg ++n +        
  mrna29354.1-v1.0-hybrid 172 YRFRPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDIPKasdLV--GISDWmmHEFRLPATNASTGAHSNSKditeeaev 254
                              69************************.89***************534322..3445544888888888888887776545555555 PP

                      NAM  78 ..............tksgyWkatgkd 89 
                                              +  W++t ++
  mrna29354.1-v1.0-hybrid 255 wtlcrilkrnnssrKYETNWHKTSSK 280
                              55555555555444334456666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.266168307IPR003441NAC domain
PfamPF023656.6E-6171282IPR003441NAC domain
SuperFamilySSF1019412.22E-17172263IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MESGRGSCWG GGAPSRAPYG GEQREIRTAG SGVDVRTDLK VRMSVRSPPS GSGDGAPPPQ  60
KTPAASPTTF LSRRKKRTRR GGKVLGDAAG VFWGGGAPAQ EGGERMDVRT SSRVRTSAFQ  120
ADPYYIALDK YHAWVNADFL LEKCLVACLC SLAAIPGNGK GFRQAVEYDS EYRFRPTDEE  180
LVRFYLRRKV ENKPIRLELI KLIDIYKYDP WDIPKASDLV GISDWMMHEF RLPATNASTG  240
AHSNSKDITE EAEVWTLCRI LKRNNSSRKY ETNWHKTSSK QSAADCKFGN MQYRVRWKFW  300
CFGCSED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29354.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-19NAC domain containing protein 42