PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29294.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 500aa MW: 56519.7 Da PI: 9.8273 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.8 | 2.2e-11 | 57 | 88 | 15 | 46 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46 R++ ++KKAeELS LC+++v++i++ + ++ mrna29294.1-v1.0-hybrid 57 DRKKNVFKKAEELSKLCGVDVCLILYQRQSNI 88 6***********************99876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.002 | 38 | 94 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-10 | 42 | 110 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.278 | 43 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-9 | 58 | 85 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF64356 | 2.98E-15 | 353 | 468 | IPR011012 | Longin-like domain |
Gene3D | G3DSA:3.30.450.60 | 5.2E-4 | 356 | 417 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MANHLSTTLA LTKEDVDFEG RIMEIQAPDY LKLENMDPQR NKQQLSSSKS DRKKVRDRKK 60 NVFKKAEELS KLCGVDVCLI LYQRQSNIAE TWPQDPEQVK RIVAGYKANP AIRDASLPSS 120 EIKGLKESRA RESDGGHWIK GLKESRARKS SREMLYPTWD DRLDYCTEKE LIRLVASLDA 180 KLEASTKRID SLSRKSSKSG ALDHHPMVNS NLNSVPFREI NDLRRSSRNY IPSMQLKSRR 240 FAAVLLRRRA SPVLAHLPSP FRLGMSASRM GWVRAEIDDG VAGVRSGLGW SSTWLDRGWG 300 RALLAGVRRG QWRRPVFSFS SVEEAVGDCD LFSSVEEAAG DCNSFSSVKV VLAASVVTKA 360 GKVLVSRQFS DMPRTRIEGL LVAFPKLLGT TEKQHTYFET ENVRFVYQPV EATYLVLENS 420 CSLDEEGICK KAFELIFSFD EIISLGHKEN VTLAQVEQFC GMESHEEKLQ KLVMQKKINE 480 NKDAMRRKAI EIYKSKVFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a1u_H | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1v_H | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1v_P | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1v_Y | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1w_H | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1x_H | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1x_P | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1x_Q | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1y_H | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5a1y_P | 1e-39 | 350 | 496 | 2 | 170 | COATOMER SUBUNIT DELTA |
5nzr_D | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzs_D | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzt_D | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzt_I | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzu_D | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzv_D | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
5nzv_N | 1e-39 | 350 | 496 | 2 | 170 | Coatomer subunit delta |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29294.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34846 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-10 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | mrna29294.1-v1.0-hybrid |