PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29294.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 500aa    MW: 56519.7 Da    PI: 9.8273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29294.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.82.2e-1157881546
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                              R++ ++KKAeELS LC+++v++i++  + ++
  mrna29294.1-v1.0-hybrid 57 DRKKNVFKKAEELSKLCGVDVCLILYQRQSNI 88
                             6***********************99876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0023894IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-1042110IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.2784395IPR002100Transcription factor, MADS-box
PfamPF003194.6E-95885IPR002100Transcription factor, MADS-box
SuperFamilySSF643562.98E-15353468IPR011012Longin-like domain
Gene3DG3DSA:3.30.450.605.2E-4356417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MANHLSTTLA LTKEDVDFEG RIMEIQAPDY LKLENMDPQR NKQQLSSSKS DRKKVRDRKK  60
NVFKKAEELS KLCGVDVCLI LYQRQSNIAE TWPQDPEQVK RIVAGYKANP AIRDASLPSS  120
EIKGLKESRA RESDGGHWIK GLKESRARKS SREMLYPTWD DRLDYCTEKE LIRLVASLDA  180
KLEASTKRID SLSRKSSKSG ALDHHPMVNS NLNSVPFREI NDLRRSSRNY IPSMQLKSRR  240
FAAVLLRRRA SPVLAHLPSP FRLGMSASRM GWVRAEIDDG VAGVRSGLGW SSTWLDRGWG  300
RALLAGVRRG QWRRPVFSFS SVEEAVGDCD LFSSVEEAAG DCNSFSSVKV VLAASVVTKA  360
GKVLVSRQFS DMPRTRIEGL LVAFPKLLGT TEKQHTYFET ENVRFVYQPV EATYLVLENS  420
CSLDEEGICK KAFELIFSFD EIISLGHKEN VTLAQVEQFC GMESHEEKLQ KLVMQKKINE  480
NKDAMRRKAI EIYKSKVFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a1u_H1e-393504962170COATOMER SUBUNIT DELTA
5a1v_H1e-393504962170COATOMER SUBUNIT DELTA
5a1v_P1e-393504962170COATOMER SUBUNIT DELTA
5a1v_Y1e-393504962170COATOMER SUBUNIT DELTA
5a1w_H1e-393504962170COATOMER SUBUNIT DELTA
5a1x_H1e-393504962170COATOMER SUBUNIT DELTA
5a1x_P1e-393504962170COATOMER SUBUNIT DELTA
5a1x_Q1e-393504962170COATOMER SUBUNIT DELTA
5a1y_H1e-393504962170COATOMER SUBUNIT DELTA
5a1y_P1e-393504962170COATOMER SUBUNIT DELTA
5nzr_D1e-393504962170Coatomer subunit delta
5nzs_D1e-393504962170Coatomer subunit delta
5nzt_D1e-393504962170Coatomer subunit delta
5nzt_I1e-393504962170Coatomer subunit delta
5nzu_D1e-393504962170Coatomer subunit delta
5nzv_D1e-393504962170Coatomer subunit delta
5nzv_N1e-393504962170Coatomer subunit delta
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29294.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3484622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-10AGAMOUS-like 82