PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29260.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 463aa    MW: 52401.8 Da    PI: 7.1926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29260.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49281532128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                              +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg
  mrna29260.1-v1.0-hybrid  28 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATG 112
                              79***************************.89***************888889********************************* PP

                      NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  mrna29260.1-v1.0-hybrid 113 ADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 153
                              ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5527174IPR003441NAC domain
PROSITE profilePS5100555.55227174IPR003441NAC domain
PfamPF023652.1E-2429153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSHEEDESNK QHHEVEVDHD EHEHDMVMPG FRFHPTEEEL IEFYLRRKVE GKRFNVELIT  60
FLDLYRYDPW ELPAMAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRSE  120
NFRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHHETER YQKGEISLCR VYKRPGVEDH  180
PSLPRSLPSS RAAAANANGA STSRSLLQAQ SSSSSSLNKK QHSINSSLME KLQANFNFNG  240
GSSSLGQSVQ QLHHHHHQDQ VAADPKINET EGSSGNSDVT STLGVGLRSS ATNIPIHHPS  300
SPLGLQPHHH HHGGVLHLDD HHAEQEGIST FLQQHHHHSK PQTLLFAGSS VSATSNVIDD  360
LQRLLNYQQQ QAVSNIANQQ QALHVQQYYD AHSHNHNHNQ QLPSNVVNHF SSPFPLAPPP  420
PSQSQLSPNG LPVTAFSDRL WDWNPISEPN RAPDQYNTNP FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-542917419165NO APICAL MERISTEM PROTEIN
1ut4_B1e-542917419165NO APICAL MERISTEM PROTEIN
1ut7_A1e-542917419165NO APICAL MERISTEM PROTEIN
1ut7_B1e-542917419165NO APICAL MERISTEM PROTEIN
4dul_A1e-542917419165NAC domain-containing protein 19
4dul_B1e-542917419165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29260.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301581.10.0PREDICTED: NAC domain-containing protein 48
TrEMBLA0A2P6PCA80.0A0A2P6PCA8_ROSCH; Putative transcription factor NAM family
STRINGXP_004301581.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-107NAC domain containing protein 35