PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29254.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33434.9 Da PI: 8.8653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ mrna29254.1-v1.0-hybrid 43 RGHWRPAEDSKLKQLVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 88 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.9e-18 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ mrna29254.1-v1.0-hybrid 95 RRAFSEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 138 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.514 | 38 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-14 | 42 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.4E-28 | 42 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-16 | 43 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 44 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.56E-14 | 46 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.913 | 90 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-15 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 95 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 97 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-7 | 106 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGDGVHDRKR KSTMSLNLAG DESDHEDVIQ NPAAAGSTKL CVRGHWRPAE DSKLKQLVAQ 60 FGPQNWNLIA EHLDGRSGKS CRLRWFNQLD PRINRRAFSE EEEERLLSAH RLYGNKWAMI 120 ARLFPGRTDN AVKNHWHVIM ARKHREESNV FKRRKPSSNS LPQHDHDQQD GTKNNASSDR 180 STISINTSND ESGSAASAST CTNLSLTPSN RPALLPSLFS NIKNPFQQQK IFGSQMVADS 240 GRIKGNGNGQ SSDSNSEVSG EESVLTTYRT NNNNVSSMSG EDQIEKMSLI PFIDFLGVGS 300 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-34 | 42 | 143 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29254.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301570.2 | 0.0 | PREDICTED: transcription factor MYB44-like isoform X1 | ||||
TrEMBL | A0A2P6PCM6 | 0.0 | A0A2P6PCM6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004301570.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-71 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | mrna29254.1-v1.0-hybrid |