PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29166.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 766aa MW: 87017.4 Da PI: 6.51

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29166.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.6	1.6e-31	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r++tr+gCka+++vkk+++g+w v+kl++eHnH mrna29166.1-v1.0-hybrid 83 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDGGEN--RSKRQRTVTRVGCKAQMTVKKQSSGRWAVSKLVKEHNH 166 9***************************************9988..999******************************* PP FAR1 88 elap 91 el+p mrna29166.1-v1.0-hybrid 167 ELVP 170 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-28	83	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-30	291	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.756	575	607	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.1E-11	579	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-9	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MDYKPLTIGN DVVEFDLGGS GEDDAIALDL EHPDDAYDLF EEDDLVQLGS RSTRFGDDLG 60 NGDPNLEPCE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG 120 FRRDGGENRS KRQRTVTRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHELVP PDKVHCLRSH 180 RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG 240 GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN 300 RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI 360 IRAAVMQVFP GTCHRFCKWN VFREAQEKLS HIYQSHPTFE AEFLRCINLT ETIDEFEICW 420 ESLIKRYDLD SNEWLQSMYY ARQQWVPVFL RDTFFGELFV TQGSDNINSY FDGYINASTN 480 IQVLIKQYEK AIATRHEKEV KADYDTLNIS PVLRTPSPME KQTAKLYTRI IFMKFQEELV 540 ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE FSGIICRHIL 600 AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DAHALGLPKD SHDSSAARYD NLRREVTKYV 660 EEGAESERVY NVAMDALHEA LNKVAAAKKH GPGVVQSTPV KCSEQVLSCT MDQDKKIEEL 720 TAELEIASQR CEAYQAKLLA ILKDMEEQKL KISVNVQNVR LNLKM*

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MDYKPLTIGN DVVEFDLGGS GEDDAIALDL EHPDDAYDLF EEDDLVQLGS RSTRFGDDLG  60
NGDPNLEPCE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG  120
FRRDGGENRS KRQRTVTRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHELVP PDKVHCLRSH  180
RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG  240
GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN  300
RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI  360
IRAAVMQVFP GTCHRFCKWN VFREAQEKLS HIYQSHPTFE AEFLRCINLT ETIDEFEICW  420
ESLIKRYDLD SNEWLQSMYY ARQQWVPVFL RDTFFGELFV TQGSDNINSY FDGYINASTN  480
IQVLIKQYEK AIATRHEKEV KADYDTLNIS PVLRTPSPME KQTAKLYTRI IFMKFQEELV  540
ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE FSGIICRHIL  600
AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DAHALGLPKD SHDSSAARYD NLRREVTKYV  660
EEGAESERVY NVAMDALHEA LNKVAAAKKH GPGVVQSTPV KCSEQVLSCT MDQDKKIEEL  720
TAELEIASQR CEAYQAKLLA ILKDMEEQKL KISVNVQNVR LNLKM*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29166.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301609.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011465002.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6PBY1	0.0	A0A2P6PBY1_ROSCH; Putative transcription factor FAR family
STRING	XP_004301609.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna29166.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]