PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29159.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 321aa    MW: 35003.3 Da    PI: 4.479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29159.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.2e-10156198446
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                              +k+ rr  +N+ AA rsR+R+k+++  Le k+k Le+e ++L 
  mrna29159.1-v1.0-hybrid 156 SKKRRRQLRNKDAAMRSRERRKMYVTDLEMKSKYLEGECRRLG 198
                              6999**********************************98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-11152213No hitNo description
SMARTSM003380.0058153217IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.461155197IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-10157212No hitNo description
PfamPF001704.2E-8157197IPR004827Basic-leucine zipper domain
CDDcd147044.86E-14158209No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEFGGNLDFL DDGVDVIGEI DWDFVFEDAN GLDSLQELDN AAVTAAPGAS PSSSSSSTVE  60
DAPANAESGS IDTWIGEVEN MLMKDDDGSK VASEEPPKEY YENFLADILV DSPSTESPTD  120
VDSNSNGSAE SDKEKSGGSP INNDTDADAD ADDPVSKKRR RQLRNKDAAM RSRERRKMYV  180
TDLEMKSKYL EGECRRLGRL LQCCYAENHA LRLSLQMGNA YGRGVSGTKQ ESAVLVMELL  240
LLGSLLWLLD LTCLFTLPLM PHLLLLTLNQ EQAHKALEGV GPRARGGASK MILALQSQSF  300
VKTRRCKASR TKMKYAFLVS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29159.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300086.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A2P6PC031e-167A0A2P6PC03_ROSCH; Putative transcription factor bZIP family
STRINGXP_004300086.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-16basic region/leucine zipper motif 60