PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29149.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SBP | ||||||||
Protein Properties | Length: 1072aa MW: 118589 Da PI: 8.3115 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.3 | 2.8e-40 | 151 | 228 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ mrna29149.1-v1.0-hybrid 151 MCQVDDCKEDLSTAKDYHRRHKVCESHSKSTKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 228 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-34 | 145 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.53 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-36 | 150 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-29 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.38E-5 | 826 | 958 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.0E-5 | 833 | 961 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 8.985 | 902 | 969 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.897 | 902 | 925 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1072 aa Download sequence Send to blast |
MEEIGAQVAT PIFLRQSLSS RFCDPPAAMA KKKRDLPYQA PNYQHPNSQT LFGNPGSNSW 60 NPNVWDWDAV RFVARPLDTE MMGASNSEPR RKEEAAGGAV KSTAVAVEDE DERLQLNLGG 120 GLASVEEPAV SRPNKRVRSG SPGNNGGSYP MCQVDDCKED LSTAKDYHRR HKVCESHSKS 180 TKALVAKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQPED VTSRLTIPGD 240 GDNKTSGNLD IVSLLAAITR PQGKTDVRNT NSSSVLDREQ LLQILSKINS LPLPVDLAAK 300 LPNLGNLNWK ASDLLPLDLQ NKLNGKTSVS TLDLITVLSA TLATPSDTLA ILSQKSSQSS 360 DSEKTKLTCS DQERPNLQKR SPQEFHSAGG ERSSTSYQSP AEDSDCQVQE TRVKLPLQLF 420 SSSPEDDSPP KLASSRKYFS SDSSNRTEER SPSSSPPVMQ TLFPMKSMAE TVKSEKQSIS 480 KECNLNLDYS LNGGSNLPFD LFRGSNRGAV SSSIQNFPHQ AGYTSSGSDH SPSSLNSDPQ 540 DRTGRILFKL FDKDPSQLPG TLRTQVYSWL SNSPSEMESH IRPGCVVLSV YVSMPFAAWE 600 HLEENLVQHV SSLVQSSDSD FWRSGRFLVN TGRQLASHKD GKIRLCKAWR SYSSPELISV 660 SPLAVVGGQQ TSLSIRGRNL TNHGTKIHCT YKGGYTSKEV GTTYHGTAYD EINLGSFQIL 720 DASPGVLGRC FIEVENGFKG NSFPVIIADA TICRELNLIE SEFDSERKVC GAISEDENHD 780 YGRPRSREEV LHFLNELGWL FQRKRISSMF QGSGYSLSRF KFLLTFSVER DFCTVVKTLL 840 DILVNFDGDG LSRESLGMLS DVQLLNRAVK RRCRKMIDLL INYSVISSDK KYIFPPNHAG 900 PGGLTPLHLA ASMSNSEDMI DALMNDPEEI GLSCWNSLLD GNGQSPYAYA MMRNNYSYNN 960 LVARKLTDKR NSQVTLTIGN EIEQTHMGIE LERRRSIQLR QGSRSCAKCA LAATKYTRRV 1020 PGAQGLLQRP FIHSMLAIAA VCVCVCLFLR GSPDIGSVAP FKWENLDFGT I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 140 | 225 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 866 | 871 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29149.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300082.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2P6PC02 | 0.0 | A0A2P6PC02_ROSCH; Putative transcription factor SBP family | ||||
STRING | XP_004300082.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | mrna29149.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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