PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29122.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 313aa    MW: 35609.2 Da    PI: 4.2273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29122.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.61.3e-111310841128
                      NAM  41 kvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......kgelvglkktLvfykg 111
                              ++ePw++ +     +       ++k++yfF+k++k    g+r+ r++ +g Wk +g  ++v+        +++l glkk  ++ + 
  mrna29122.1-v1.0-hybrid  13 NLEPWQIWQefesrH--VndlrKNKDMYFFTKNKK---LGSRTCRKVGTGSWKGQGAGNPVYLLdenadpTTTLLGLKKAYTYVN- 92 
                              579**9964345542..0345466799***99876...489********************9985555544555*********94. PP

                      NAM 112 rapkgektdWvmheyrl 128
                               +++ ++ +Wvm e++l
  mrna29122.1-v1.0-hybrid  93 -RNSVHHGHWVMYEFQL 108
                              .445569********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.9321128IPR003441NAC domain
SuperFamilySSF1019411.09E-1213126IPR003441NAC domain
PfamPF023651.0E-635108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGKLFCDSDL YGNLEPWQIW QEFESRHVND LRKNKDMYFF TKNKKLGSRT CRKVGTGSWK  60
GQGAGNPVYL LDENADPTTT LLGLKKAYTY VNRNSVHHGH WVMYEFQLHS SQITQLTNDC  120
VLCMLRNNDE LPKRKRHQEE EGLEEQSVEV SAGDSHLSSD ALVVEEPQEQ CLQAPAVTAP  180
FFNGADLEQW YLNQQQEAGP TPLEDEPAVS LQGSESLAVQ QPATELQQRE HSQITTEPQQ  240
REENLTQQCQ DMPTFVANET MTQGEVDVYD ASLGDVMVGE HWREGLLNDE QLNSLYLGDW  300
NDDGLDFSDF QW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29122.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465771.10.0PREDICTED: uncharacterized protein LOC105351884
TrEMBLA0A2P6QGR34e-98A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-08NAC family protein