PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29122.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35609.2 Da PI: 4.2273 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.6 | 1.3e-11 | 13 | 108 | 41 | 128 |
NAM 41 kvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......kgelvglkktLvfykg 111 ++ePw++ + + ++k++yfF+k++k g+r+ r++ +g Wk +g ++v+ +++l glkk ++ + mrna29122.1-v1.0-hybrid 13 NLEPWQIWQefesrH--VndlrKNKDMYFFTKNKK---LGSRTCRKVGTGSWKGQGAGNPVYLLdenadpTTTLLGLKKAYTYVN- 92 579**9964345542..0345466799***99876...489********************9985555544555*********94. PP NAM 112 rapkgektdWvmheyrl 128 +++ ++ +Wvm e++l mrna29122.1-v1.0-hybrid 93 -RNSVHHGHWVMYEFQL 108 .445569********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.932 | 1 | 128 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-12 | 13 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-6 | 35 | 108 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGKLFCDSDL YGNLEPWQIW QEFESRHVND LRKNKDMYFF TKNKKLGSRT CRKVGTGSWK 60 GQGAGNPVYL LDENADPTTT LLGLKKAYTY VNRNSVHHGH WVMYEFQLHS SQITQLTNDC 120 VLCMLRNNDE LPKRKRHQEE EGLEEQSVEV SAGDSHLSSD ALVVEEPQEQ CLQAPAVTAP 180 FFNGADLEQW YLNQQQEAGP TPLEDEPAVS LQGSESLAVQ QPATELQQRE HSQITTEPQQ 240 REENLTQQCQ DMPTFVANET MTQGEVDVYD ASLGDVMVGE HWREGLLNDE QLNSLYLGDW 300 NDDGLDFSDF QW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29122.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465771.1 | 0.0 | PREDICTED: uncharacterized protein LOC105351884 | ||||
TrEMBL | A0A2P6QGR3 | 4e-98 | A0A2P6QGR3_ROSCH; Putative transcription factor NAM family |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 3e-08 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29122.1-v1.0-hybrid |