PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29106.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 357aa    MW: 40564.1 Da    PI: 4.248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29106.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.33.7e-2031401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka....eekewyfFskrdkkyatgkrkn 75 
                              l pG rF P d+el+ +yLk+ v+gk ++ ++  + + d+y ++ePw++ +     +       ++k++yfF+k++k    g+r+ 
  mrna29106.1-v1.0-hybrid   3 LLPGQRFCPMDDELLLHYLKPMVNGKIVPGKDSlFCDSDLYgNLEPWQIWQefesrH--VndlrKNKDMYFFTKNKK---LGSRTC 83 
                              579************************99888769999999457*****75345542..0345466799***99876...489*** PP

                      NAM  76 ratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              r++ +g Wk +g  ++v+        +++l glkk  ++ +  +++ ++ +Wvm e++l
  mrna29106.1-v1.0-hybrid  84 RKVGTGSWKGQGAGNPVYLLdenadpTTTLLGLKKAYTYVN--RNSVHHGHWVMYEFQL 140
                              *****************9985555544555*********94..445569********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-222158IPR003441NAC domain
PROSITE profilePS5100525.793160IPR003441NAC domain
PfamPF023654.9E-155140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGLLPGQRFC PMDDELLLHY LKPMVNGKIV PGKDSLFCDS DLYGNLEPWQ IWQEFESRHV  60
NDLRKNKDMY FFTKNKKLGS RTCRKVGTGS WKGQGAGNPV YLLDENADPT TTLLGLKKAY  120
TYVNRNSVHH GHWVMYEFQL HSSQITQLTN DSVLCMLRNN DELPKRKRHQ EEEGLEEQSV  180
EVSAGDSHLS SDALVVEEPQ EQCLQAPAVT APFFNGADLE QWYLNQQVME PIPPLIEAEQ  240
EAGPTPLEDE PAVSLQGSES LAVQQPATEL QQREHSQITT EPQQREEKLT QQCQDMPTFV  300
ANETMTQGEI DVYDASLGDV MVGEHWRESL LNDEQLNSLY LGDWNDDALD FSDFQW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29106.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465771.10.0PREDICTED: uncharacterized protein LOC105351884
TrEMBLA0A2P6QGR31e-123A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.14e-14NAC domain containing protein 20