PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29106.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40564.1 Da PI: 4.248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.3 | 3.7e-20 | 3 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka....eekewyfFskrdkkyatgkrkn 75 l pG rF P d+el+ +yLk+ v+gk ++ ++ + + d+y ++ePw++ + + ++k++yfF+k++k g+r+ mrna29106.1-v1.0-hybrid 3 LLPGQRFCPMDDELLLHYLKPMVNGKIVPGKDSlFCDSDLYgNLEPWQIWQefesrH--VndlrKNKDMYFFTKNKK---LGSRTC 83 579************************99888769999999457*****75345542..0345466799***99876...489*** PP NAM 76 ratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 r++ +g Wk +g ++v+ +++l glkk ++ + +++ ++ +Wvm e++l mrna29106.1-v1.0-hybrid 84 RKVGTGSWKGQGAGNPVYLLdenadpTTTLLGLKKAYTYVN--RNSVHHGHWVMYEFQL 140 *****************9985555544555*********94..445569********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-22 | 2 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.79 | 3 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-15 | 5 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGLLPGQRFC PMDDELLLHY LKPMVNGKIV PGKDSLFCDS DLYGNLEPWQ IWQEFESRHV 60 NDLRKNKDMY FFTKNKKLGS RTCRKVGTGS WKGQGAGNPV YLLDENADPT TTLLGLKKAY 120 TYVNRNSVHH GHWVMYEFQL HSSQITQLTN DSVLCMLRNN DELPKRKRHQ EEEGLEEQSV 180 EVSAGDSHLS SDALVVEEPQ EQCLQAPAVT APFFNGADLE QWYLNQQVME PIPPLIEAEQ 240 EAGPTPLEDE PAVSLQGSES LAVQQPATEL QQREHSQITT EPQQREEKLT QQCQDMPTFV 300 ANETMTQGEI DVYDASLGDV MVGEHWRESL LNDEQLNSLY LGDWNDDALD FSDFQW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29106.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465771.1 | 0.0 | PREDICTED: uncharacterized protein LOC105351884 | ||||
TrEMBL | A0A2P6QGR3 | 1e-123 | A0A2P6QGR3_ROSCH; Putative transcription factor NAM family |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 4e-14 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | mrna29106.1-v1.0-hybrid |