PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29103.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 384aa MW: 42101.7 Da PI: 7.3861 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.6e-31 | 133 | 188 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e mrna29103.1-v1.0-hybrid 133 SIKYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 188 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-25 | 134 | 189 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.0E-28 | 134 | 186 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-31 | 135 | 186 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 136 | 185 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.28E-18 | 309 | 371 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 309 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.9E-27 | 310 | 366 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MELSSHQEGQ IPISIPIPIP IPINTSYGAG GHGHGHMIHH HHHHEPAASH SHTLIHNSHL 60 ITSSAPPVVA PPPPQNQIPA SINNNGSSIP TATSPDQEEQ EEEDEEHVNH VNVAYNHNHN 120 NNSNNNKKVV NSSIKYKECL KNHAAAMGGT ATDGCGEFMP SGEEGTIEAL NCSACNCHRN 180 FHRKEIEGDH GMSSWDVNNN STRVGTVGRK VLLGHPNAHN NMSILAADAL GFHTAANPTG 240 GFLPSRTAPH HPHHHPHQMI MSYNNNMSMG GLMGTHLPSE SDEQEQDQIH HHGHGGGVNV 300 ASRAPVQLVK KRFRTKFTQE QKEKMFNFAE KVGWKIQKQE ESVVQNFCHE IGVKRRVLKV 360 WMHNNKHNLA KNKSQPPPST TTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-22 | 311 | 368 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29103.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ492960 | 3e-56 | FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301574.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-64 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2P6PCH9 | 0.0 | A0A2P6PCH9_ROSCH; Putative transcription factor ZF-HD family | ||||
STRING | XP_004301574.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 9e-64 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | mrna29103.1-v1.0-hybrid |