PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29100.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 1043aa    MW: 115997 Da    PI: 8.1574
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29100.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.24e-50211253107
                     CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                              ++++rwl+++ei++iL n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+
  mrna29100.1-v1.0-hybrid  21 ESQQRWLRPTEICEILRNYQRFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHG 106
                              449*********************************************************************************** PP

                     CG-1  89 eenptfqrrcywlLeeele 107
                              e+n++fqrr+yw+L++  e
  mrna29100.1-v1.0-hybrid 107 EDNENFQRRSYWMLDTMVE 125
                              ***************9854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.2915144IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-6118139IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4322125IPR005559CG-1 DNA-binding domain
CDDcd001021.20E-4440528No hitNo description
SuperFamilySSF812965.95E-17441527IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.107.3E-6441531IPR013783Immunoglobulin-like fold
PfamPF018338.5E-6443526IPR002909IPT domain
CDDcd002041.96E-14623732No hitNo description
SuperFamilySSF484039.4E-17624735IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.998629734IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.8E-17629737IPR020683Ankyrin repeat-containing domain
SMARTSM002483200640669IPR002110Ankyrin repeat
PROSITE profilePS500889.538673705IPR002110Ankyrin repeat
SMARTSM002480.036673702IPR002110Ankyrin repeat
SMARTSM00248540712741IPR002110Ankyrin repeat
SMARTSM00015110791813IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.56E-7828897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.077846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.59847876IPR000048IQ motif, EF-hand binding site
PfamPF006126.9E-4849867IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67870894IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4873891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.723950978IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MAEMRKYLPN QQLELSQILR ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DTMVEVMCLY VADGKQNVPT TGNKSGVSRL LVDPGSQVGS PQSASAPCSA QANSPAPTVQ  180
TSFASNPIKV EWNGQKLSTE FEDVDSPGDA GASSGTQPMP GSFLNACLQS PEVGRLSESF  240
RNPSGIWYAG PKGYESAGSS DWAMHRSTRT ECNLHEQNLF VEDIKKNLFE ELNGSTHKLT  300
DARMDGNTGV KDEIIEDRLT TNINVQPVTT PSLKEARFQG HSDPHTVPFS TAQVKKSSGD  360
AGVRSRGEPV ELKKLDSFGR WMDREIGVDC DDSLMASDSG NYWSTLEAEN GDREVSSLSG  420
HMQLDVDSLG PSLSQEQLFS ICDFSPDWSY SGTESKVLIA GRFLGSKRNS TDTKWGCMFG  480
EIEVSAEVLT DNVIRCRTPL HAPGCVPFYV TCRNRLACSE VREFEYREQP VGIAVNSSRE  540
YELSFQLRLA KLLNLGSERK WLECSALDCD KCKLRSSLCS IRSSCGSDWV IADGASMACK  600
SDQLTHRDVL IQNLLKDRLF EWLVCKVHEE GKGPHVLDND GQGVLHLTAA LGYEWAMGLI  660
VSAGVSPNFR DAHGRTGLHW ASYYGREETV ITLLGLGAAP GAVEDPTPEF PGGQTAADLA  720
SSRGHKGIAG YLAEADLTSH LSLLTVNDKT LDNVSATIAA EKAIETSEAV TSDVTVDDEN  780
SLEGSLAAVR KSAHAAALIQ ATFRARSFRQ RQLSQSSSDI SEASIDLVAL GSLKRVQKFS  840
HYEDYLHSAA ALKIQRKYRG WKGRKEFLKI RNRIVKIQAH VRGHQVRKTY KKLVWSVGIM  900
EKVILRWRRK RPGLRGFRVE KAVDTSSENK RSDDYDFLSV GRKQKFAGVE KALARVQSMS  960
RHPEAREQYM RLQLKFEKLK MVDVSGASNK VEEIISIIVD GQDTAKRQSV STFYFPPVAV  1020
ENLRCCKKGT SRVLNHTSNS TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A3e-1262973458157ank3C2_1
5hry_B3e-1262973458157ank3C2_1
5hry_C3e-1262973458157ank3C2_1
5hry_D3e-1262973458157ank3C2_1
5hry_E3e-1262973458157ank3C2_1
5hry_F3e-1262973458157ank3C2_1
5hry_G3e-1262973458157ank3C2_1
5hry_H3e-1262973458157ank3C2_1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29100.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464948.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A2P6PCH30.0A0A2P6PCH3_ROSCH; Putative transcription factor CG1-CAMTA family
STRINGXP_004300026.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein