PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29100.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 1043aa MW: 115997 Da PI: 8.1574 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.2 | 4e-50 | 21 | 125 | 3 | 107 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 ++++rwl+++ei++iL n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+ mrna29100.1-v1.0-hybrid 21 ESQQRWLRPTEICEILRNYQRFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHG 106 449*********************************************************************************** PP CG-1 89 eenptfqrrcywlLeeele 107 e+n++fqrr+yw+L++ e mrna29100.1-v1.0-hybrid 107 EDNENFQRRSYWMLDTMVE 125 ***************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 69.29 | 15 | 144 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-61 | 18 | 139 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-43 | 22 | 125 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 1.20E-4 | 440 | 528 | No hit | No description |
SuperFamily | SSF81296 | 5.95E-17 | 441 | 527 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 7.3E-6 | 441 | 531 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 8.5E-6 | 443 | 526 | IPR002909 | IPT domain |
CDD | cd00204 | 1.96E-14 | 623 | 732 | No hit | No description |
SuperFamily | SSF48403 | 9.4E-17 | 624 | 735 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.998 | 629 | 734 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.8E-17 | 629 | 737 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3200 | 640 | 669 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.538 | 673 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.036 | 673 | 702 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 540 | 712 | 741 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 110 | 791 | 813 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 9.56E-7 | 828 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.077 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.59 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 6.9E-4 | 849 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.3E-4 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.67 | 870 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 873 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.723 | 950 | 978 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MAEMRKYLPN QQLELSQILR ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 DTMVEVMCLY VADGKQNVPT TGNKSGVSRL LVDPGSQVGS PQSASAPCSA QANSPAPTVQ 180 TSFASNPIKV EWNGQKLSTE FEDVDSPGDA GASSGTQPMP GSFLNACLQS PEVGRLSESF 240 RNPSGIWYAG PKGYESAGSS DWAMHRSTRT ECNLHEQNLF VEDIKKNLFE ELNGSTHKLT 300 DARMDGNTGV KDEIIEDRLT TNINVQPVTT PSLKEARFQG HSDPHTVPFS TAQVKKSSGD 360 AGVRSRGEPV ELKKLDSFGR WMDREIGVDC DDSLMASDSG NYWSTLEAEN GDREVSSLSG 420 HMQLDVDSLG PSLSQEQLFS ICDFSPDWSY SGTESKVLIA GRFLGSKRNS TDTKWGCMFG 480 EIEVSAEVLT DNVIRCRTPL HAPGCVPFYV TCRNRLACSE VREFEYREQP VGIAVNSSRE 540 YELSFQLRLA KLLNLGSERK WLECSALDCD KCKLRSSLCS IRSSCGSDWV IADGASMACK 600 SDQLTHRDVL IQNLLKDRLF EWLVCKVHEE GKGPHVLDND GQGVLHLTAA LGYEWAMGLI 660 VSAGVSPNFR DAHGRTGLHW ASYYGREETV ITLLGLGAAP GAVEDPTPEF PGGQTAADLA 720 SSRGHKGIAG YLAEADLTSH LSLLTVNDKT LDNVSATIAA EKAIETSEAV TSDVTVDDEN 780 SLEGSLAAVR KSAHAAALIQ ATFRARSFRQ RQLSQSSSDI SEASIDLVAL GSLKRVQKFS 840 HYEDYLHSAA ALKIQRKYRG WKGRKEFLKI RNRIVKIQAH VRGHQVRKTY KKLVWSVGIM 900 EKVILRWRRK RPGLRGFRVE KAVDTSSENK RSDDYDFLSV GRKQKFAGVE KALARVQSMS 960 RHPEAREQYM RLQLKFEKLK MVDVSGASNK VEEIISIIVD GQDTAKRQSV STFYFPPVAV 1020 ENLRCCKKGT SRVLNHTSNS TV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hry_A | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_B | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_C | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_D | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_E | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_F | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_G | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
5hry_H | 3e-12 | 629 | 734 | 58 | 157 | ank3C2_1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29100.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464948.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3-like isoform X1 | ||||
TrEMBL | A0A2P6PCH3 | 0.0 | A0A2P6PCH3_ROSCH; Putative transcription factor CG1-CAMTA family | ||||
STRING | XP_004300026.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12889 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29100.1-v1.0-hybrid |