PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29088.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 940aa MW: 106706 Da PI: 7.8055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29088.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++++k rr+r+++r+gC+a ++++k++ + +w+vt + mrna29088.1-v1.0-hybrid 62 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPSKTSNESKPRRNRKSSRCGCQAYMRISKTTelgSLEWRVTGFT 147 69***********9998877356667999*************9******************9988889**** PP FAR1 83 leHnHela 90 ++HnHel mrna29088.1-v1.0-hybrid 148 NHHNHELL 155 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-20	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-8	560	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MSEEAGVMLV VYDDPSDRQS FSLDDTSSSE ESLDETRLSL ETTNDVIPYI GKRFATHDAA 60 YEYYSEFAKQ CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPSKTSNE SKPRRNRKSS 120 RCGCQAYMRI SKTTELGSLE WRVTGFTNHH NHELLEPNQV RFLPAYRTIT ESDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDLEEESID LLKMCRNIKE 240 KDRNFKFEYT IDSKNRLENI AWSYASSVQS YETFGDAVVF DTTHRLTAFD MPLGIWVGIN 300 NYGMPCFFGC VLLREESVRS FSWALKAFLG FMHGKAPQTI LTDQNLFLKE AISADMPTTK 360 HALCVWMIVA KFPSWFNAVL GERYNEWKSE FYGIYNLEAI EDFELGWTDL VNSFGLQSNR 420 HIVNLYDLRS LWALPFLRSH FFAGMATIGQ SKSINAFIQR FLSAQSRLAH FIEQVAVAVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASVLTPYAFS KLQEQLVLAA HYASFQMDDG 540 FLVRHHTKGD GGRIVYWVPR EGIITCSCHH FEFSGILCRH ALRVLSTGNC FEIPDRYLPV 600 RWRRISTPSA KLLYSVPSDH AERIELLQRI VSTLVTESAK SRERLDIATE QDLNEVGWAG 660 LKTTLGITLL GAGTWEEVLM QVQCLVDEEI SFGSWDKNGS VNDRTTCSSR SSLSLLKWLP 720 PDLGFVTLNF DVSVHHGKAC IGFVIRDHFG NPHMAASKSI GDTNVLVAEA TVSREGYRQV 780 SIIKYGIIKF RRQAMVTVAC NGYEEYGRRR RTKESESNEE ELKRNGAMVE DRGLVFAPTR 840 EMWCGISLLV PQLSSLKSGV LLDALTVCRL QRRAMSFLAG MTIRPNGGQC IGWMYGSLTG 900 CTLQVSRKYL LREYPEIIIA LTCPATAHLR AKQNDKFLE*

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MSEEAGVMLV VYDDPSDRQS FSLDDTSSSE ESLDETRLSL ETTNDVIPYI GKRFATHDAA  60
YEYYSEFAKQ CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPSKTSNE SKPRRNRKSS  120
RCGCQAYMRI SKTTELGSLE WRVTGFTNHH NHELLEPNQV RFLPAYRTIT ESDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDLEEESID LLKMCRNIKE  240
KDRNFKFEYT IDSKNRLENI AWSYASSVQS YETFGDAVVF DTTHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC VLLREESVRS FSWALKAFLG FMHGKAPQTI LTDQNLFLKE AISADMPTTK  360
HALCVWMIVA KFPSWFNAVL GERYNEWKSE FYGIYNLEAI EDFELGWTDL VNSFGLQSNR  420
HIVNLYDLRS LWALPFLRSH FFAGMATIGQ SKSINAFIQR FLSAQSRLAH FIEQVAVAVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASVLTPYAFS KLQEQLVLAA HYASFQMDDG  540
FLVRHHTKGD GGRIVYWVPR EGIITCSCHH FEFSGILCRH ALRVLSTGNC FEIPDRYLPV  600
RWRRISTPSA KLLYSVPSDH AERIELLQRI VSTLVTESAK SRERLDIATE QDLNEVGWAG  660
LKTTLGITLL GAGTWEEVLM QVQCLVDEEI SFGSWDKNGS VNDRTTCSSR SSLSLLKWLP  720
PDLGFVTLNF DVSVHHGKAC IGFVIRDHFG NPHMAASKSI GDTNVLVAEA TVSREGYRQV  780
SIIKYGIIKF RRQAMVTVAC NGYEEYGRRR RTKESESNEE ELKRNGAMVE DRGLVFAPTR  840
EMWCGISLLV PQLSSLKSGV LLDALTVCRL QRRAMSFLAG MTIRPNGGQC IGWMYGSLTG  900
CTLQVSRKYL LREYPEIIIA LTCPATAHLR AKQNDKFLE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29088.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300021.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2P6PCK3	0.0	A0A2P6PCK3_ROSCH; Putative transcription factor FAR family
STRING	XP_004300021.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	mrna29088.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]