PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29085.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 311aa    MW: 35306.1 Da    PI: 5.8326
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29085.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.23.6e-15271626128
                      NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiyk...vePwdLpk...kvka.eekewyfFskrdkkyatgkrknr.atksgy 82 
                               F+Ptd +lv +yL ++++  +  + +++++++diy    +ePw        ++  +++  yfF++ +k +++gkr  r + + g+
  mrna29085.1-v1.0-hybrid  27 TFNPTDAQLVGHYLYNQTTLGHgGNGKQAFPDLDIYGesgMEPWAVWDslePIRIpHQDFSYFFARVKKLSSKGKRLCRrVGSGGT 112
                              5**************99776664666678*****9963337****9532443333234456***************9995777999 PP

                      NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapk...gektdWvmheyrl 128
                              W++t   k+v++   +++ g  + L + ++++++    ++  W+m+ey++
  mrna29085.1-v1.0-hybrid 113 WSETEPGKDVFVDgVQQAYGKLRKLRYENKDEESfgyQHHGAWLMEEYTI 162
                              ***********9844555788899999855444322245889******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.68122178IPR003441NAC domain
SuperFamilySSF1019411.01E-1423173IPR003441NAC domain
PfamPF023652.6E-1127162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASCSSSSSR SSGLIRLEEL QWGVVKTFNP TDAQLVGHYL YNQTTLGHGG NGKQAFPDLD  60
IYGESGMEPW AVWDSLEPIR IPHQDFSYFF ARVKKLSSKG KRLCRRVGSG GTWSETEPGK  120
DVFVDGVQQA YGKLRKLRYE NKDEESFGYQ HHGAWLMEEY TINHLPDLAL YRLKVNDKGG  180
HHNQRNKRKT ISDENPSSFK KQKLESKRDQ QVCAASFTTK QQQPPQCVDH DYSMDQNLEL  240
QQIITTVPQQ QVVEPNSSNC EELQQQGEQQ LLLSPSPSLG GDDSQNTLYI QSDEFNAFEQ  300
DLYQYSILLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29085.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457371.14e-73PREDICTED: uncharacterized protein LOC105349416
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-06NAC domain containing protein 20