PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29085.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35306.1 Da PI: 5.8326 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.2 | 3.6e-15 | 27 | 162 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkk.leleevikevdiyk...vePwdLpk...kvka.eekewyfFskrdkkyatgkrknr.atksgy 82 F+Ptd +lv +yL ++++ + + +++++++diy +ePw ++ +++ yfF++ +k +++gkr r + + g+ mrna29085.1-v1.0-hybrid 27 TFNPTDAQLVGHYLYNQTTLGHgGNGKQAFPDLDIYGesgMEPWAVWDslePIRIpHQDFSYFFARVKKLSSKGKRLCRrVGSGGT 112 5**************99776664666678*****9963337****9532443333234456***************9995777999 PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapk...gektdWvmheyrl 128 W++t k+v++ +++ g + L + ++++++ ++ W+m+ey++ mrna29085.1-v1.0-hybrid 113 WSETEPGKDVFVDgVQQAYGKLRKLRYENKDEESfgyQHHGAWLMEEYTI 162 ***********9844555788899999855444322245889******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.681 | 22 | 178 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.01E-14 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-11 | 27 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MASCSSSSSR SSGLIRLEEL QWGVVKTFNP TDAQLVGHYL YNQTTLGHGG NGKQAFPDLD 60 IYGESGMEPW AVWDSLEPIR IPHQDFSYFF ARVKKLSSKG KRLCRRVGSG GTWSETEPGK 120 DVFVDGVQQA YGKLRKLRYE NKDEESFGYQ HHGAWLMEEY TINHLPDLAL YRLKVNDKGG 180 HHNQRNKRKT ISDENPSSFK KQKLESKRDQ QVCAASFTTK QQQPPQCVDH DYSMDQNLEL 240 QQIITTVPQQ QVVEPNSSNC EELQQQGEQQ LLLSPSPSLG GDDSQNTLYI QSDEFNAFEQ 300 DLYQYSILLQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29085.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011457371.1 | 4e-73 | PREDICTED: uncharacterized protein LOC105349416 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12591 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-06 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | mrna29085.1-v1.0-hybrid |