PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29004.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 337aa    MW: 39139 Da    PI: 5.3488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29004.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.39.4e-37121042103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+yei++d+++++++sws+ +nsfvv+d++ fa ++LpkyFkh+nf+SFvRQLn+YgFkkv++++         weF+h+ F 
  mrna29004.1-v1.0-hybrid  12 FLSKTYEIVDDSTTNHIVSWSKANNSFVVWDPQAFAIRLLPKYFKHNNFSSFVRQLNTYGFKKVDTDR---------WEFAHEVFL 88 
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i+r++++
  mrna29004.1-v1.0-hybrid  89 RGQKHLLKNIRRRRNT 104
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-578101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-399101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.96E-369101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MERLNEQCPP PFLSKTYEIV DDSTTNHIVS WSKANNSFVV WDPQAFAIRL LPKYFKHNNF  60
SSFVRQLNTY GFKKVDTDRW EFAHEVFLRG QKHLLKNIRR RRNTSHNVHY ANSQQGLDSC  120
IEVGSFGSLD GEIDQLRRDK EVLMGELVKL RQQQQTTRLH LHGMEDRLKR TEMKQQQMMN  180
FLARAMQNPN FVHQLAQKKD RKKQLEDAIR KKRRRLIEGP SSIEVGELGQ GGGEAFVKVE  240
PQYYGDITEL EVSGLDTFVV EMQGTDENQL VHDGLECMEK EEDHERRSKD LSEVFWEEFL  300
NDGVDEDVEV PGVQEEDEED VNVLIEQLGC LVSKPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-261010127129Heat shock factor protein 1
5d5v_B3e-261010127129Heat shock factor protein 1
5d5v_D3e-261010127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188101RGQKHLLKNIRRRR
2198211KDRKKQLEDAIRKK
3200214RKKQLEDAIRKKRRR
4211215KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29004.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296577.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-116HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P6QPK00.0A0A2P6QPK0_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004296577.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B