PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28941.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YA

Protein Properties

Length: 172aa MW: 18961.1 Da PI: 9.4698

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28941.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.9	3e-32	79	135	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k k+rkpylheSRh hAlrR+Rg+gGrF mrna28941.1-v1.0-hybrid 79 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKNRKPYLHESRHLHALRRARGCGGRF 135 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.0E-36	77	138	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.942	78	138	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-27	80	135	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	81	103	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	83	103	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	112	135	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSHPGIPGPM QYVTPPQIGA GHAVAPGAYP YPDPYYRSIF APYDTQAYPP QPYGGQPTVH 60 LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH GILRRRQSRA KAESENKALK NRKPYLHESR 120 HLHALRRARG CGGRFLNAKK DENEQSGGEN SQTIINLNSD ENERSSSDRT S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	78	143	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28941.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293988.1	1e-125	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_011460650.1	1e-125	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2P6Q631	1e-115	A0A2P6Q631_ROSCH; Putative transcription factor Hap2/NF-YA family
STRING	XP_004293988.1	1e-124	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	mrna28941.1-v1.0-hybrid

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]