PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28935.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 311aa MW: 34222.1 Da PI: 6.8015

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28935.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	4.9e-17	54	114	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ + +eq+ +Le+ F++ +ps+ee + ++++l ++ +++V++WFqNr+ + k+ mrna28935.1-v1.0-hybrid 54 KRRWIPRPEQIGILEAIFNSgMVNPSREEVRMITAQLqeygQVVDANVFYWFQNRKSRSKH 114 89***************99***********************************995 PP
2	Wus_type_Homeobox	104.6	6.4e-34	53	116	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW P+peQi iLe++++sG+++P++ee++ ita+L+eyG++ d+NVfyWFQNrk+R+++k+ mrna28935.1-v1.0-hybrid 53 PKRRWIPRPEQIGILEAIFNSGMVNPSREEVRMITAQLQEYGQVVDANVFYWFQNRKSRSKHKH 116 579**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.45E-12	50	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.965	50	115	IPR001356	Homeobox domain
SMART	SM00389	2.8E-8	52	119	IPR001356	Homeobox domain
CDD	cd00086	2.19E-7	53	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-7	53	123	IPR009057	Homeodomain-like
Pfam	PF00046	8.0E-15	54	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MASSNRHWPN MFKSKPTHQY RWQHDAVNPS LVPNGYSTAT TSSGLEDEMT PEPKRRWIPR 60 PEQIGILEAI FNSGMVNPSR EEVRMITAQL QEYGQVVDAN VFYWFQNRKS RSKHKHRRLQ 120 YSNKTQFSPP PPHDVCNLNS PTASSVNQTS FFPNPEVFPV NNPAASSSNG PVASADFSTT 180 QGFYFSELAN VVHGNNSPDL HHTGLLLSEI MNNNGMASPM STHFQVIGGE AGAAIMGAGG 240 AAAISTVFIN DVAFEVAEGP FNVREAFGDD AVLIHSSGHP VLTNEWGVTL HSLHHGAFYY 300 LQQLARVQQF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28935.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460646.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
Refseq	XP_011460647.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBL	A0A2P6Q4E7	1e-131	A0A2P6Q4E7_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004295604.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	2e-34	WUSCHEL related homeobox 8

Link Out ? help Back to Top
Phytozome	mrna28935.1-v1.0-hybrid