PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28846.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 441aa MW: 50393.4 Da PI: 8.9888

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28846.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.4	6.3e-10	35	74	1	41
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41 +fYneY+++ GFs+rk++ k + g it+rtfvC keg + mrna28846.1-v1.0-hybrid 35 DFYNEYGRREGFSIRKDSCAKD-KFGVITSRTFVCCKEGPS 74 6***************9998.7788*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-7	35	76	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEESVEESSM ELSKEELIWK PRYGMEFDYD EVAYDFYNEY GRREGFSIRK DSCAKDKFGV 60 ITSRTFVCCK EGPSVTNIAN EFLSLSVKLF ETREDLLSVV RKIGKSQGYA MILHFGNNVT 120 SRAEGAHGTL KKYLQVSTGG LREVKENICL AIQNQFQEII TQLASEKIRV PQKLCIPFFK 180 EVVNKGMNIE VLPLTHIHKQ WRIDTRSFTN DHHASMDHED PFNSLLSEIK ERYEKQPLMQ 240 KENTMRQLSR IRGASSPLIF EPTLQPHKGR PFFEELFNKQ THREHMKKEK EARGVSRAVT 300 SATLGRDLVH KARVCALAGG PEICASPAHS WARMRRCKGE DDEQKMTSFE VCFDSFKAGK 360 LRDSIFERIS LEIGKNKIGL GLGITRFNQA FGYGGYGGYG GYGRNQVPRG WETDYEVIQR 420 KYREKGFRSE GVGVRGNLFL *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEESVEESSM ELSKEELIWK PRYGMEFDYD EVAYDFYNEY GRREGFSIRK DSCAKDKFGV  60
ITSRTFVCCK EGPSVTNIAN EFLSLSVKLF ETREDLLSVV RKIGKSQGYA MILHFGNNVT  120
SRAEGAHGTL KKYLQVSTGG LREVKENICL AIQNQFQEII TQLASEKIRV PQKLCIPFFK  180
EVVNKGMNIE VLPLTHIHKQ WRIDTRSFTN DHHASMDHED PFNSLLSEIK ERYEKQPLMQ  240
KENTMRQLSR IRGASSPLIF EPTLQPHKGR PFFEELFNKQ THREHMKKEK EARGVSRAVT  300
SATLGRDLVH KARVCALAGG PEICASPAHS WARMRRCKGE DDEQKMTSFE VCFDSFKAGK  360
LRDSIFERIS LEIGKNKIGL GLGITRFNQA FGYGGYGGYG GYGRNQVPRG WETDYEVIQR  420
KYREKGFRSE GVGVRGNLFL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28846.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13278	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-08	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna28846.1-v1.0-hybrid