PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28762.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 330aa    MW: 37514.9 Da    PI: 6.4267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28762.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.85.2e-37211422128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                               pGfrFhPtdeelv +yL  kve+kk      ++l++ i+++diyk++PwdLp             skr +ky+++ r+nr+t sg
  mrna28762.1-v1.0-hybrid  21 LPGFRFHPTDEELVGFYLPVKVEKKKistrtsTRLDQLIRQIDIYKYDPWDLP-------------SKRGRKYRNSVRPNRVTGSG 93 
                              69************************665554444447***************.............57999*************** PP

                      NAM  82 yWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                              +Wkatg dk+++s+++ l  +glkk+Lv+y+g+a kg+ktdW+m+e+rl
  mrna28762.1-v1.0-hybrid  94 FWKATGIDKPIYSAEEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 142
                              *************7443356***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-4119172IPR003441NAC domain
PROSITE profilePS5100540.98620173IPR003441NAC domain
PfamPF023651.1E-1822142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEAAKVKLK DGDEELEGGI LPGFRFHPTD EELVGFYLPV KVEKKKISTR TSTRLDQLIR  60
QIDIYKYDPW DLPSKRGRKY RNSVRPNRVT GSGFWKATGI DKPIYSAEEP LECIGLKKSL  120
VYYRGSAGKG TKTDWMMNEF RLPPNGKSAT NFLNAKDNTE EAEVWTLCRI FKRIPSYKKY  180
IPNWKQEEAT STKHNPNPTD LNSKTCSFES ENCSTHDPYS SLEDVSVVDI QKINERKPVV  240
VEQVHHGETN NHWFHGSGQF GSLADGHPQE ANSFTTSYNG SSFMRNELSL RSSETDDFFT  300
DGSCWDELRP VVQLANGCGY IHQVYDDCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-3541791171NO APICAL MERISTEM PROTEIN
1ut4_B2e-3541791171NO APICAL MERISTEM PROTEIN
1ut7_A2e-3541791171NO APICAL MERISTEM PROTEIN
1ut7_B2e-3541791171NO APICAL MERISTEM PROTEIN
4dul_A2e-3541791171NAC domain-containing protein 19
4dul_B2e-3541791171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28762.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303892.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A314YUU21e-111A0A314YUU2_PRUYE; Uncharacterized protein
STRINGXP_004303892.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-72NAC domain containing protein 42