PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28757.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 678aa    MW: 76582.3 Da    PI: 9.2753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28757.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1716105198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk+    d ++++ l +pkkf+ ++g++   s  + l+ +sg +Wev+l  ++++g+++++kGW eF     L+ g f+vF+++g
  mrna28757.1-v1.0-hybrid  16 FFKII--LDDTSKHKLKIPKKFVMKYGKD--LSSSVCLKLPSGSEWEVEL--TRCKGKIWFEKGWPEFFMFCSLDYGSFLVFRYEG 95 
                              77877..89999999***********977..7778***************..********************************** PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              +s f  +v +f+
  mrna28757.1-v1.0-hybrid  96 NSHF--RVCIFD 105
                              9999..998887 PP
2B3421.6e-13243311477
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                               + +++ ++s+ l+lp +fa++h +k + s  +tl+ ++gr+W+v++  + + ++  +++GW  Fvk+n+L++g
  mrna28757.1-v1.0-hybrid 243 SM-KPSETQSS-LSLPLNFAKRHFIKRPAS-NITLQILDGRTWSVEF--TYSEEEARFQEGWLTFVKDNNLEVG 311
                              34.44444444.***********6666665.89999999********..666667779**************98 PP
3B353.73.8e-17368447787
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              ++++ ++  +++p++fa+++ ++ + +   +l+ ++gr+W vk++y+   +r  l kGW  Fv++n+Lk+gD++vF+l+++
  mrna28757.1-v1.0-hybrid 368 QPSYIERPVMSIPNEFAKRYLMNFPAD-IAILKVLDGRTWHVKFKYDHANSRGRLMKGWLPFVRENNLKVGDVCVFTLVNS 447
                              556666677***********4443332.467788************66555656889********************9764 PP
4B342.61.1e-135466181085
                              HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ++ + l +p kfa+++ +++k++     + + + rsW v+li  kk++++ + +GW  F k+n L+egD+++F+l+
  mrna28757.1-v1.0-hybrid 546 LGSGHSLHVPDKFARSFiKHVKQT----GILQVKDRSWHVNLIPFKKPRAISICGGWAAFIKENCLREGDVCIFELM 618
                              5677889********997666544....3445666*******99*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-2310107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-2410107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.64714107IPR003340B3 DNA binding domain
CDDcd100171.03E-1814105No hitNo description
SMARTSM010198.1E-1416107IPR003340B3 DNA binding domain
PfamPF023629.9E-1516105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18233311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16234311IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-15238311No hitNo description
PROSITE profilePS5086310.856238334IPR003340B3 DNA binding domain
SMARTSM010199.1E-5240327IPR003340B3 DNA binding domain
PfamPF023621.7E-11242311IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20357450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-23358459IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-22361458No hitNo description
PROSITE profilePS5086314.494362460IPR003340B3 DNA binding domain
SMARTSM010191.1E-13363460IPR003340B3 DNA binding domain
PfamPF023624.0E-15367447IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-17533619IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-16536619IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404537631IPR003340B3 DNA binding domain
SMARTSM010191.0E-4541631IPR003340B3 DNA binding domain
CDDcd100175.98E-14541619No hitNo description
PfamPF023622.1E-11546618IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASVPLLRVS STTPHFFKII LDDTSKHKLK IPKKFVMKYG KDLSSSVCLK LPSGSEWEVE  60
LTRCKGKIWF EKGWPEFFMF CSLDYGSFLV FRYEGNSHFR VCIFDMSATE VDYPITIPKI  120
DEAEDLSIEI LEDFQLNPKT IRKSPVPYPP HEKMRTSFSG KAEMLSESEK TQPCCDMFEK  180
PITDEESYCR KLQAKKKDGS VTRGSSGTQK LLNQTSLKVV LGNAISLRRA YDFKTENPLF  240
IVSMKPSETQ SSLSLPLNFA KRHFIKRPAS NITLQILDGR TWSVEFTYSE EEARFQEGWL  300
TFVKDNNLEV GRNSFPTQKD GGNSSGSQTF LKPTTPHEAP SRMKQLTVTE KADAFKSDKP  360
PSFRIALQPS YIERPVMSIP NEFAKRYLMN FPADIAILKV LDGRTWHVKF KYDHANSRGR  420
LMKGWLPFVR ENNLKVGDVC VFTLVNSIEL LFEVVFFPTT ESANCSSPTG HGIGSTIQNG  480
RTESSVVKVE PECSLSCEIG FNLGNNMSKT KGQVTQMPSS SLRTSRVNLE AASKFSPKNP  540
FFKVTLGSGH SLHVPDKFAR SFIKHVKQTG ILQVKDRSWH VNLIPFKKPR AISICGGWAA  600
FIKENCLREG DVCIFELMEM IDIDQKAQSP KAKTQDIEMA TYQPFGPLSK EVVTEILELP  660
LPVRSCTRVL KLEKSVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28757.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467595.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A2P6S0D70.0A0A2P6S0D7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004305844.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-30B3 family protein