PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28755.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 630aa    MW: 71580.9 Da    PI: 8.4683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28755.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.97.2e-211562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ede+l++av+++G ++W++Ia++ g++R++k+c++rw +yl
  mrna28755.1-v1.0-hybrid 15 KGKWTPDEDEKLIEAVALHGAKNWTSIASKAGLNRSGKSCRLRWVNYL 62
                             79********************************************97 PP
2Myb_DNA-binding49.31.2e-1568111146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg ++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  mrna28755.1-v1.0-hybrid  68 RGDMSEQEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWYT 111
                              7899******************.*********.***********97 PP
3B3581.8e-18366447486
                              E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              + +++++ +  +++lp++f++++  +++ ++   ++l+ ++gr+W+vk++y+   +r  l +GW++Fv+ n Lk+gD+++F+l++
  mrna28755.1-v1.0-hybrid 366 IVMHPYSIRYECVSLPNEFTRRYlmKLP-AG--IVKLRVLDGRTWSVKFKYDHLNSRARLHGGWSSFVRGNSLKVGDVCIFTLIN 447
                              567899999999***********85444.33..69999*************99999999***********************875 PP
4B344.82.2e-145446281098
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              +++ + + +p +f +++ + +++     + + ++rsW v+l  + ++ + + + +GW  F+k+n L+egD+++F+l++ ++  l+v
  mrna28755.1-v1.0-hybrid 544 MGSGHTMHIPANFSRSFIKHEKQ---TAILQVKNRSWHVNL--NPYKPGaTSICGGWAAFAKENCLREGDVCIFELMELNDIVLKV 624
                              6778899*******999433223...44556689*******..65554449999*********************99779998999 PP

                              EEE- CS
                       B3  95 kvfr 98 
                              +vfr
  mrna28755.1-v1.0-hybrid 625 HVFR 628
                              9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2551066IPR017930Myb domain
SuperFamilySSF466891.12E-3013109IPR009057Homeodomain-like
SMARTSM007173.9E-181464IPR001005SANT/Myb domain
PfamPF002494.6E-201562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-241669IPR009057Homeodomain-like
CDDcd001671.31E-131762No hitNo description
PROSITE profilePS5129420.76767117IPR017930Myb domain
SMARTSM007178.7E-1667115IPR001005SANT/Myb domain
PfamPF002493.6E-1468111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2370117IPR009057Homeodomain-like
CDDcd001671.56E-1071113No hitNo description
Gene3DG3DSA:2.40.330.104.2E-4221261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-21357449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21361459IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-23362458No hitNo description
PROSITE profilePS5086313.987363461IPR003340B3 DNA binding domain
SMARTSM010197.6E-13364461IPR003340B3 DNA binding domain
PfamPF023622.3E-16366447IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20531628IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19533628IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871535629IPR003340B3 DNA binding domain
SMARTSM010191.8E-7539628IPR003340B3 DNA binding domain
CDDcd100172.74E-17539628No hitNo description
PfamPF023622.5E-12543628IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MASQNQKPTP TALVKGKWTP DEDEKLIEAV ALHGAKNWTS IASKAGLNRS GKSCRLRWVN  60
YLRPNIKRGD MSEQEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWY TRLSKKIQQK  120
EKQSNNGANS TIQFPAVDEK TSVADDDQKV HVEMKQECVS SAVRTSAALI KKEEVIDPED  180
HSSTCINNID ADEFLNLLNE EEPLSWEEPL EVEQWLLFSR QDFKIPKKFV MKYGKDLSDP  240
VCLKLLSGSE WEVELIRSRG NSHFHVCICD MSATEIDYPI TMPKIEEADE DDIYLLKSWR  300
IFNPVLKQEG NIYYRENGFL TKREGGSSSG CQKFLKQTYE ILGRMKPLTA TEKDNAFNSV  360
NPSFRIVMHP YSIRYECVSL PNEFTRRYLM KLPAGIVKLR VLDGRTWSVK FKYDHLNSRA  420
RLHGGWSSFV RGNSLKVGDV CIFTLINCIE LLFEVVFFHT KDSANCPSST GHGRGASVQV  480
EEKKHPILEV EPDCSLDCKI GKNNLSKISG QVTQMPSSSL RTSRVNLEAA SKFSSKNPFF  540
KVIMGSGHTM HIPANFSRSF IKHEKQTAIL QVKNRSWHVN LNPYKPGATS ICGGWAAFAK  600
ENCLREGDVC IFELMELNDI VLKVHVFRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131175108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28755.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467598.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_011467599.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_011467600.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_011467601.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
STRINGXP_004305843.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-47myb domain protein 66