PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28724.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 691aa    MW: 79931.6 Da    PI: 8.9292
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28724.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.32.5e-2326111290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                               Yn+YA + GFsvrks+ ++   n+ i  r+fvCskeg++++++   e +++++ etr+gCka++    + dg w +++++++HnH
  mrna28724.1-v1.0-hybrid  26 LYNTYALRKGFSVRKSHIRRDASNN-IRLREFVCSKEGFAQDQDVF-EPTKHRKLETRVGCKAMISFIVK-DGIWTISHINSDHNH 108
                              7****************99996555.*****************999.99******************999.*************** PP

                     FAR1  88 ela 90 
                              ela
  mrna28724.1-v1.0-hybrid 109 ELA 111
                              *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-2126111IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.767282320IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-5295322IPR006564Zinc finger, PMZ-type
PfamPF044348.5E-6295317IPR007527Zinc finger, SWIM-type
SuperFamilySSF813243.01E-14563661No hitNo description
Gene3DG3DSA:1.10.287.701.1E-6566624No hitNo description
PfamPF005205.3E-8567628IPR005821Ion transport domain
Gene3DG3DSA:1.10.287.6301.2E-5636686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006811Biological Procession transport
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane
GO:0005216Molecular Functionion channel activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEEIIEDDEE LKVGTQVHSD EEAYNLYNTY ALRKGFSVRK SHIRRDASNN IRLREFVCSK  60
EGFAQDQDVF EPTKHRKLET RVGCKAMISF IVKDGIWTIS HINSDHNHEL ANPEERQFLR  120
SGRKVTDACG QVLWDNLIGR YNLGNNPWLA KLYSLRQKWC AAFNLDTFSA RIRSTQRSES  180
TNNVFQGIST HTMELIKFVH HYKKKIEELR LTELEDDYRS KNGARRPKVW TKMLSSAAKV  240
YTNKIFQFFE TEFYSCMGVR LKEVSSKDQV YVYEAIEDGR ESVHKIEYNS TSLSISCSCK  300
SFKSVGILCR HALKVFDTNN ITTLPTQYIL KRWTKEAKKG HLLTEAMKRL EKDKDTLYVL  360
ENLKNFGAES GSTISSNETL VLNPPNAKTK GMKNSRIKDV METNQRKKRT KEQENQENND  420
PKAPTDVSTF NNHRFVVPNI PTFCNQYGVP NIPTVSNQFG VPNTPTFSNQ GNLSWPFEHP  480
HSHVSYGQMP FSNQRVNQCL QDACHNSNMQ SCPNLIDCWH ARYLSLDELI TKRRLNEKAA  540
LCFSPNGDFS YGIYAPIINI TTGHIITKYL YSLFWGFQQI STLGGNLTPS YNNGEIIFTM  600
VIIGLGLFLL ALLIGNMQNF LQSLGQRRSD MLMRRRDVEA WMRYRNLPEE FRRQVRNAEQ  660
YSATDVNEER ILENLPDELQ INIRRHFFGY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28724.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024196405.11e-143protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004305834.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-28FAR1-related sequence 5