PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28720.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 369aa    MW: 41615.8 Da    PI: 6.959
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28720.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32202259259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp +v++tYeg+Hnh+
  mrna28720.1-v1.0-hybrid 202 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFHDPATVITTYEGQHNHQ 259
                              8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-34186261IPR003657WRKY domain
SuperFamilySSF1182907.06E-29194261IPR003657WRKY domain
PROSITE profilePS5081132.409196261IPR003657WRKY domain
SMARTSM007741.2E-38201260IPR003657WRKY domain
PfamPF031062.3E-25202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSNEKKSPYL QYDPFDYNPH EIDRSSFPFF NYSSSSIYNI PQTPADPQTQ SLHGFESDPS  60
YLMSFADCLN GSMDYTTLSK AFDISCSSSE VISPPLLDQD DHSKNKAAAA VVGDQNPSTP  120
NSSISCSSNE AGAARHHEHE NNQDSDKISK KDKHQKVVQS AEEAPGDHED ESKKVNKAKK  180
KEKRQREPRF AFLTKSEIDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCNVKKRVER  240
SFHDPATVIT TYEGQHNHQC PATLRGSMNA VGMLTPSFLG GFGTSNNGSP RFPHQLLLTQ  300
LLTPVDNNQL QLQAQHHYDP AGSIFYSNLM STLHQNQPQQ QQQHVHVPHD YNLLQDLAPS  360
FSHKLEEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-291942621078Probable WRKY transcription factor 4
2lex_A5e-291942621078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185KEKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28720.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303874.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A2P6S0850.0A0A2P6S085_ROSCH; Putative transcription factor WRKY family
STRINGXP_004303874.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-51WRKY DNA-binding protein 71