PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna28610.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 199aa MW: 22900 Da PI: 8.7811 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.9 | 9.3e-20 | 61 | 162 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dg 74 kfY++Y+ GFs+rk++ k++ + +t+r++vCskeg ree+ kk +++ r t ++r +C a l ++ +g mrna28610.1-v1.0-hybrid 61 KFYSSYSLAKGFSMRKHRLDKNRAGTLVTRRDLVCSKEGMREESVKKdakdssghnsnKKRCRGTCRVSRENCPAILIARRCAkRG 146 6*******************************************99999***9998655555669999************9998** PP FAR1 75 kwevtkleleHnHela 90 +++v+++ eHnH+la mrna28610.1-v1.0-hybrid 147 VYYVAEFIIEHNHSLA 162 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-17 | 61 | 162 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDLDSEYISR PEDSVDDKEE TCLSESVQMK DCTHYRGKPY KDLTLEDLVG VEFATIEEVE 60 KFYSSYSLAK GFSMRKHRLD KNRAGTLVTR RDLVCSKEGM REESVKKDAK DSSGHNSNKK 120 RCRGTCRVSR ENCPAILIAR RCAKRGVYYV AEFIIEHNHS LAKPEHRQFM RSHRHVRDND 180 LAQVNALRKV SVRTCCAY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna28610.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462185.1 | 1e-146 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6QC95 | 6e-61 | A0A2P6QC95_ROSCH; Putative transcription factor FAR family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19973 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 8e-13 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna28610.1-v1.0-hybrid |