PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28602.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 386aa    MW: 44308.6 Da    PI: 5.6658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28602.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16206293195
                              EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                              f+k +++s+     +l+lp+kf+  h      ++ t+tled++g+++e ++  +k+     l++GWk+F++a++L+  D++vF+l+
  mrna28602.1-v1.0-hybrid 206 FIKSMIRSNIAVCFMLTLPRKFCHLHlP--LYGTATITLEDKEGKEFETNFLADKRA----LSGGWKGFCQAKDLRLDDVLVFQLV 285
                              88999999999999*********66652..446779***************555554....9**********************98 PP

                              SSSEE..EEE CS
                       B3  86 grsefelvvk 95 
                              +  +f  +v+
  mrna28602.1-v1.0-hybrid 286 SPLKF--KVH 293
                              74333..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-21202298IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-18203298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-24204296No hitNo description
PfamPF023625.1E-14206292IPR003340B3 DNA binding domain
SMARTSM010192.4E-16206298IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52206298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDQVRVSRSL QNQPVESFST SNRPYHGSTN WTSRSDVATV RLRRTEKTSE YYREEEEEEE  60
EDEEVQEDSM DISPLSVPRQ QFDNLTLDSP SVQQRKRSKT RISRFSPTQL VKFHNLTLNT  120
PNSEQRQPLE EANKYGFKTP KRKRHLSPSL NTNPEISSDP QKHGGCKRSR TNRSMSWHFG  180
HPEESPDRSQ VKEIPENLEA DGFPFFIKSM IRSNIAVCFM LTLPRKFCHL HLPLYGTATI  240
TLEDKEGKEF ETNFLADKRA LSGGWKGFCQ AKDLRLDDVL VFQLVSPLKF KVHKLRPDYD  300
LNEEDVDAAF VLLKMSTSEQ TLLEEDPPTP HPRDVFHGNI REICLIPDLN VELVDDDETE  360
DRITKTINLA PILQGGGFDL ARTSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28602.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461498.10.0PREDICTED: uncharacterized protein LOC101300235 isoform X1
TrEMBLA0A2P6PMI71e-164A0A2P6PMI7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004296077.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3482822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-24B3 family protein