PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28601.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 275aa    MW: 31922.3 Da    PI: 6.0396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28601.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15119202190
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+k +++ +v     l+lpk+f+  +        ++t+tlede+g++++  +   + ++r  l++GW+ F+ a +L  gD +vF+l
  mrna28601.1-v1.0-hybrid 119 FLKSMIHCNVVHGFSLTLPKQFCYLYlpF----HDTTITLEDERGEEYRTVY--LGDKRR--LSGGWRAFCVAMNLVLGDLLVFHL 196
                              89999999***************666432....5679***************..666666..9**********************9 PP

                              -SSSEE CS
                       B3  85 dgrsef 90 
                              +g  +f
  mrna28601.1-v1.0-hybrid 197 VGPLKF 202
                              884333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-23113209IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-18114209IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-21117205No hitNo description
SMARTSM010191.1E-17119210IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815119210IPR003340B3 DNA binding domain
PfamPF023628.0E-14119202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNLGQENFFQ YFQEDEENPT TIPDLSVPST TTTTTPFDDF TLHSHTSPPS VEQHCQNGFK  60
PWKWKSPLSP IPKRKNAGDP LKHRGYKRKM TKSNYHEKSS VRNQLQDILA NLGPECPFFL  120
KSMIHCNVVH GFSLTLPKQF CYLYLPFHDT TITLEDERGE EYRTVYLGDK RRLSGGWRAF  180
CVAMNLVLGD LLVFHLVGPL KFKVYKVEPD NLNEVDAAFI LLKLSLSTLF DDDQSEDYMI  240
IILALSYYFI QDFLLEDFPS NRECRQQFDD EIRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28601.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461497.11e-174PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X2
TrEMBLA0A2P6PMJ31e-133A0A2P6PMJ3_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004294826.11e-172(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3240622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-29B3 family protein