PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna28601.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31922.3 Da PI: 6.0396 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 1.9e-15 | 119 | 202 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++ +v l+lpk+f+ + ++t+tlede+g++++ + + ++r l++GW+ F+ a +L gD +vF+l mrna28601.1-v1.0-hybrid 119 FLKSMIHCNVVHGFSLTLPKQFCYLYlpF----HDTTITLEDERGEEYRTVY--LGDKRR--LSGGWRAFCVAMNLVLGDLLVFHL 196 89999999***************666432....5679***************..666666..9**********************9 PP -SSSEE CS B3 85 dgrsef 90 +g +f mrna28601.1-v1.0-hybrid 197 VGPLKF 202 884333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-23 | 113 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-18 | 114 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.37E-21 | 117 | 205 | No hit | No description |
SMART | SM01019 | 1.1E-17 | 119 | 210 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.815 | 119 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-14 | 119 | 202 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MNLGQENFFQ YFQEDEENPT TIPDLSVPST TTTTTPFDDF TLHSHTSPPS VEQHCQNGFK 60 PWKWKSPLSP IPKRKNAGDP LKHRGYKRKM TKSNYHEKSS VRNQLQDILA NLGPECPFFL 120 KSMIHCNVVH GFSLTLPKQF CYLYLPFHDT TITLEDERGE EYRTVYLGDK RRLSGGWRAF 180 CVAMNLVLGD LLVFHLVGPL KFKVYKVEPD NLNEVDAAFI LLKLSLSTLF DDDQSEDYMI 240 IILALSYYFI QDFLLEDFPS NRECRQQFDD EIRR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna28601.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461497.1 | 1e-174 | PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X2 | ||||
TrEMBL | A0A2P6PMJ3 | 1e-133 | A0A2P6PMJ3_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004294826.1 | 1e-172 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32406 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-29 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna28601.1-v1.0-hybrid |